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lines changed Original file line number Diff line number Diff line change 11# !/usr/bin/env Rscript
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3+ # Written by Harshil Patel and released under the MIT license.
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35# ###############################################
46# ###############################################
57# # REQUIREMENTS ##
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3+ # Written by Phil Ewels and released under the MIT license.
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35# Command line argument processing
46args = commandArgs(trailingOnly = TRUE )
57if (length(args ) < 5 ) {
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3+ # Written by Pranathi Vemuri and released under the MIT license.
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25"""
36Read a custom fasta file and create a custom GTF containing each entry
47"""
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3+ # Written by Harshil Patel and released under the MIT license.
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35import os
46import sys
57import glob
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3+ # Written by Olga Botvinnik with subsequent reworking by Jonathan Manning. Released under the MIT license.
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25import logging
36import argparse
47import re
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3+ # Written by Senthilkumar Panneerselvam and released under the MIT license.
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35import argparse
46import logging
57import os
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3+ # Written by Lorena Pantano and released under the MIT license.
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35library(SummarizedExperiment )
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57# # Create SummarizedExperiment (se) object from counts
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3+ # Written by Lorena Pantano with subsequent reworking by Jonathan Manning. Released under the MIT license.
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25import logging
36import argparse
47import glob
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3+ # Written by Lorena Pantano and released under the MIT license.
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35library(SummarizedExperiment )
46library(tximport )
57
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