@@ -19,29 +19,21 @@ params {
1919 max_memory = '6.GB'
2020 max_time = '6.h'
2121
22+
2223 // Input data
23- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/samplesheet/v3.10/samplesheet_test.csv
24+ // params.test_data_base (default) = ' https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/'
2425 input = "${params.test_data_base}/samplesheet/v3.10/samplesheet_test.csv"
2526
2627 // Genome references
27- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/genome.fasta
2828 fasta = "${params.test_data_base}/reference/genome.fasta"
29- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gtf.gz
3029 gtf = "${params.test_data_base}/reference/genes.gtf.gz"
31- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gff.gz
3230 gff = "${params.test_data_base}/reference/genes.gff.gz"
33- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/transcriptome.fasta
3431 transcript_fasta = "${params.test_data_base}/reference/transcriptome.fasta"
35- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/gfp.fa.gz
3632 additional_fasta = "${params.test_data_base}/reference/gfp.fa.gz"
3733
38- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/bbsplit_fasta_list.txt
3934 bbsplit_fasta_list = "${params.test_data_base}/reference/bbsplit_fasta_list.txt"
40- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/hisat2.tar.gz
4135 hisat2_index = "${params.test_data_base}/reference/hisat2.tar.gz"
42- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/salmon.tar.gz
4336 salmon_index = "${params.test_data_base}/reference/salmon.tar.gz"
44- // https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz
4537 rsem_index = "${params.test_data_base}/reference/rsem.tar.gz"
4638
4739 // Other parameters
0 commit comments