Skip to content

Commit 156da92

Browse files
committed
Define params.test_data_base default once in test.config
1 parent b17524a commit 156da92

File tree

1 file changed

+2
-10
lines changed

1 file changed

+2
-10
lines changed

conf/test.config

Lines changed: 2 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -19,29 +19,21 @@ params {
1919
max_memory = '6.GB'
2020
max_time = '6.h'
2121

22+
2223
// Input data
23-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/samplesheet/v3.10/samplesheet_test.csv
24+
// params.test_data_base (default) = 'https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/'
2425
input = "${params.test_data_base}/samplesheet/v3.10/samplesheet_test.csv"
2526

2627
// Genome references
27-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/genome.fasta
2828
fasta = "${params.test_data_base}/reference/genome.fasta"
29-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gtf.gz
3029
gtf = "${params.test_data_base}/reference/genes.gtf.gz"
31-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gff.gz
3230
gff = "${params.test_data_base}/reference/genes.gff.gz"
33-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/transcriptome.fasta
3431
transcript_fasta = "${params.test_data_base}/reference/transcriptome.fasta"
35-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/gfp.fa.gz
3632
additional_fasta = "${params.test_data_base}/reference/gfp.fa.gz"
3733

38-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/bbsplit_fasta_list.txt
3934
bbsplit_fasta_list = "${params.test_data_base}/reference/bbsplit_fasta_list.txt"
40-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/hisat2.tar.gz
4135
hisat2_index = "${params.test_data_base}/reference/hisat2.tar.gz"
42-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/salmon.tar.gz
4336
salmon_index = "${params.test_data_base}/reference/salmon.tar.gz"
44-
// https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz
4537
rsem_index = "${params.test_data_base}/reference/rsem.tar.gz"
4638

4739
// Other parameters

0 commit comments

Comments
 (0)