Skip to content

Commit 1eebe23

Browse files
pinin4fjordspinin4fjords
committed
Update versions in snaps for trimgalore
1 parent 46bc8c6 commit 1eebe23

10 files changed

+52
-31
lines changed

‎tests/default.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -40,7 +40,8 @@
4040
},
4141
"TRIMGALORE": {
4242
"trimgalore": "0.6.10",
43-
"cutadapt": 4.9
43+
"cutadapt": 4.9,
44+
"pigz": 2.8
4445
},
4546
"UNTAR_SALMON_INDEX": {
4647
"untar": 1.34
@@ -225,7 +226,8 @@
225226
},
226227
"TRIMGALORE": {
227228
"trimgalore": "0.6.10",
228-
"cutadapt": 4.9
229+
"cutadapt": 4.9,
230+
"pigz": 2.8
229231
},
230232
"TXIMETA_TXIMPORT": {
231233
"bioconductor-tximeta": "1.20.1"
@@ -1493,4 +1495,4 @@
14931495
},
14941496
"timestamp": "2024-12-03T12:39:04.406597796"
14951497
}
1496-
}
1498+
}

‎tests/featurecounts_group_type.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -40,7 +40,8 @@
4040
},
4141
"TRIMGALORE": {
4242
"trimgalore": "0.6.10",
43-
"cutadapt": 4.9
43+
"cutadapt": 4.9,
44+
"pigz": 2.8
4445
},
4546
"UNTAR_SALMON_INDEX": {
4647
"untar": 1.34
@@ -219,7 +220,8 @@
219220
},
220221
"TRIMGALORE": {
221222
"trimgalore": "0.6.10",
222-
"cutadapt": 4.9
223+
"cutadapt": 4.9,
224+
"pigz": 2.8
223225
},
224226
"TXIMETA_TXIMPORT": {
225227
"bioconductor-tximeta": "1.20.1"
@@ -1443,4 +1445,4 @@
14431445
},
14441446
"timestamp": "2024-12-03T17:25:47.179044158"
14451447
}
1446-
}
1448+
}

‎tests/hisat2.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -38,7 +38,8 @@
3838
},
3939
"TRIMGALORE": {
4040
"trimgalore": "0.6.10",
41-
"cutadapt": 4.9
41+
"cutadapt": 4.9,
42+
"pigz": 2.8
4243
},
4344
"UNTAR_HISAT2_INDEX": {
4445
"untar": 1.34
@@ -219,7 +220,8 @@
219220
},
220221
"TRIMGALORE": {
221222
"trimgalore": "0.6.10",
222-
"cutadapt": 4.9
223+
"cutadapt": 4.9,
224+
"pigz": 2.8
223225
},
224226
"TXIMETA_TXIMPORT": {
225227
"bioconductor-tximeta": "1.20.1"
@@ -1343,4 +1345,4 @@
13431345
},
13441346
"timestamp": "2024-12-03T17:38:50.917761241"
13451347
}
1346-
}
1348+
}

‎tests/kallisto.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -50,7 +50,8 @@
5050
},
5151
"TRIMGALORE": {
5252
"trimgalore": "0.6.10",
53-
"cutadapt": 4.9
53+
"cutadapt": 4.9,
54+
"pigz": 2.8
5455
},
5556
"TXIMETA_TXIMPORT": {
5657
"bioconductor-tximeta": "1.20.1"
@@ -313,7 +314,8 @@
313314
},
314315
"TRIMGALORE": {
315316
"trimgalore": "0.6.10",
316-
"cutadapt": 4.9
317+
"cutadapt": 4.9,
318+
"pigz": 2.8
317319
},
318320
"UNTAR_SALMON_INDEX": {
319321
"untar": 1.34
@@ -363,4 +365,4 @@
363365
},
364366
"timestamp": "2024-12-03T17:49:02.306667165"
365367
}
366-
}
368+
}

‎tests/min_mapped_reads.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -122,7 +122,8 @@
122122
},
123123
"TRIMGALORE": {
124124
"trimgalore": "0.6.10",
125-
"cutadapt": 4.9
125+
"cutadapt": 4.9,
126+
"pigz": 2.8
126127
},
127128
"TXIMETA_TXIMPORT": {
128129
"bioconductor-tximeta": "1.20.1"
@@ -1240,7 +1241,8 @@
12401241
},
12411242
"TRIMGALORE": {
12421243
"trimgalore": "0.6.10",
1243-
"cutadapt": 4.9
1244+
"cutadapt": 4.9,
1245+
"pigz": 2.8
12441246
},
12451247
"UNTAR_SALMON_INDEX": {
12461248
"untar": 1.34
@@ -1302,4 +1304,4 @@
13021304
},
13031305
"timestamp": "2024-12-03T17:57:59.273391037"
13041306
}
1305-
}
1307+
}

‎tests/remove_ribo_rna.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -128,7 +128,8 @@
128128
},
129129
"TRIMGALORE": {
130130
"trimgalore": "0.6.10",
131-
"cutadapt": 4.9
131+
"cutadapt": 4.9,
132+
"pigz": 2.8
132133
},
133134
"TXIMETA_TXIMPORT": {
134135
"bioconductor-tximeta": "1.20.1"
@@ -1454,7 +1455,8 @@
14541455
},
14551456
"TRIMGALORE": {
14561457
"trimgalore": "0.6.10",
1457-
"cutadapt": 4.9
1458+
"cutadapt": 4.9,
1459+
"pigz": 2.8
14581460
},
14591461
"UNTAR_SALMON_INDEX": {
14601462
"untar": 1.34
@@ -1516,4 +1518,4 @@
15161518
},
15171519
"timestamp": "2024-12-03T18:13:56.979730403"
15181520
}
1519-
}
1521+
}

‎tests/salmon.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -44,7 +44,8 @@
4444
},
4545
"TRIMGALORE": {
4646
"trimgalore": "0.6.10",
47-
"cutadapt": 4.9
47+
"cutadapt": 4.9,
48+
"pigz": 2.8
4849
},
4950
"TXIMETA_TXIMPORT": {
5051
"bioconductor-tximeta": "1.20.1"
@@ -386,7 +387,8 @@
386387
},
387388
"TRIMGALORE": {
388389
"trimgalore": "0.6.10",
389-
"cutadapt": 4.9
390+
"cutadapt": 4.9,
391+
"pigz": 2.8
390392
},
391393
"UNTAR_SALMON_INDEX": {
392394
"untar": 1.34
@@ -436,4 +438,4 @@
436438
},
437439
"timestamp": "2024-12-03T19:46:22.63337267"
438440
}
439-
}
441+
}

‎tests/skip_qc.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -37,7 +37,8 @@
3737
},
3838
"TRIMGALORE": {
3939
"trimgalore": "0.6.10",
40-
"cutadapt": 4.9
40+
"cutadapt": 4.9,
41+
"pigz": 2.8
4142
},
4243
"UNTAR_SALMON_INDEX": {
4344
"untar": 1.34
@@ -167,7 +168,8 @@
167168
},
168169
"TRIMGALORE": {
169170
"trimgalore": "0.6.10",
170-
"cutadapt": 4.9
171+
"cutadapt": 4.9,
172+
"pigz": 2.8
171173
},
172174
"TXIMETA_TXIMPORT": {
173175
"bioconductor-tximeta": "1.20.1"
@@ -821,4 +823,4 @@
821823
},
822824
"timestamp": "2024-12-03T18:20:07.800214285"
823825
}
824-
}
826+
}

‎tests/star_rsem.nf.test.snap‎

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -119,7 +119,8 @@
119119
},
120120
"TRIMGALORE": {
121121
"trimgalore": "0.6.10",
122-
"cutadapt": 4.9
122+
"cutadapt": 4.9,
123+
"pigz": 2.8
123124
},
124125
"TXIMETA_TXIMPORT": {
125126
"bioconductor-tximeta": "1.20.1"
@@ -1330,7 +1331,8 @@
13301331
},
13311332
"TRIMGALORE": {
13321333
"trimgalore": "0.6.10",
1333-
"cutadapt": 4.9
1334+
"cutadapt": 4.9,
1335+
"pigz": 2.8
13341336
},
13351337
"UNTAR_RSEM_INDEX": {
13361338
"untar": 1.34
@@ -1395,4 +1397,4 @@
13951397
},
13961398
"timestamp": "2024-12-03T18:38:21.04782292"
13971399
}
1398-
}
1400+
}

‎tests/umi.nf.test.snap‎

Lines changed: 7 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -116,7 +116,8 @@
116116
},
117117
"TRIMGALORE": {
118118
"trimgalore": "0.6.10",
119-
"cutadapt": 4.9
119+
"cutadapt": 4.9,
120+
"pigz": 2.8
120121
},
121122
"TXIMETA_TXIMPORT": {
122123
"bioconductor-tximeta": "1.20.1"
@@ -1620,7 +1621,8 @@
16201621
},
16211622
"TRIMGALORE": {
16221623
"trimgalore": "0.6.10",
1623-
"cutadapt": 4.9
1624+
"cutadapt": 4.9,
1625+
"pigz": 2.8
16241626
},
16251627
"TXIMETA_TXIMPORT": {
16261628
"bioconductor-tximeta": "1.20.1"
@@ -2788,7 +2790,8 @@
27882790
},
27892791
"TRIMGALORE": {
27902792
"trimgalore": "0.6.10",
2791-
"cutadapt": 4.9
2793+
"cutadapt": 4.9,
2794+
"pigz": 2.8
27922795
},
27932796
"UMITOOLS_EXTRACT": {
27942797
"umitools": "1.1.5"
@@ -2859,4 +2862,4 @@
28592862
},
28602863
"timestamp": "2024-12-19T23:28:01.570835895"
28612864
}
2862-
}
2865+
}

0 commit comments

Comments
 (0)