update nftignore

maxulysse · maxulysse · commit 2b856b76ae56 · 2024-10-01T13:40:00.000+02:00
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -121,5 +121,5 @@
 **/{star_rsem,star_salmon}_deseq2_{clustering,pca}-plot*{pdf,png,svg}
 bbsplit/*.stats.txt
 pipeline_info/*.{html,json,txt,yml}
-salmon/deseq2_qc/size_factors/*.txt
+**/deseq2_qc/size_factors/*.txt
 star_rsem/log/*.log
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -227,7 +227,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -221,7 +221,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -224,7 +224,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -305,7 +305,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -1321,7 +1321,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -1571,7 +1571,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -378,7 +378,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -169,7 +169,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [
@@ -1450,7 +1450,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.15.2"
+                    "nf-core/rnaseq": "v3.16.0dev"
                 }
             },
             [

Original file line number	Diff line number	Diff line change
`@@ -43,7 +43,7 @@`
`43`	`43`	`"untar": 1.34`
`44`	`44`	`},`
`45`	`45`	`"Workflow": {`
`46`		`- "nf-core/rnaseq": "v3.15.2"`
	`46`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`47`	`47`	`}`
`48`	`48`	`},`
`49`	`49`	`[`
`@@ -227,7 +227,7 @@`
`227`	`227`	`"untar": 1.34`
`228`	`228`	`},`
`229`	`229`	`"Workflow": {`
`230`		`- "nf-core/rnaseq": "v3.15.2"`
	`230`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`231`	`231`	`}`
`232`	`232`	`},`
`233`	`233`	`[`
Original file line number	Diff line number	Diff line change
`@@ -44,7 +44,7 @@`
`44`	`44`	`"untar": 1.34`
`45`	`45`	`},`
`46`	`46`	`"Workflow": {`
`47`		`- "nf-core/rnaseq": "v3.15.2"`
	`47`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`48`	`48`	`}`
`49`	`49`	`},`
`50`	`50`	`[`
`@@ -224,7 +224,7 @@`
`224`	`224`	`"untar": 1.34`
`225`	`225`	`},`
`226`	`226`	`"Workflow": {`
`227`		`- "nf-core/rnaseq": "v3.15.2"`
	`227`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`228`	`228`	`}`
`229`	`229`	`},`
`230`	`230`	`[`
Original file line number	Diff line number	Diff line change
`@@ -56,7 +56,7 @@`
`56`	`56`	`"untar": 1.34`
`57`	`57`	`},`
`58`	`58`	`"Workflow": {`
`59`		`- "nf-core/rnaseq": "v3.15.2"`
	`59`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`60`	`60`	`}`
`61`	`61`	`},`
`62`	`62`	`[`
`@@ -305,7 +305,7 @@`
`305`	`305`	`"untar": 1.34`
`306`	`306`	`},`
`307`	`307`	`"Workflow": {`
`308`		`- "nf-core/rnaseq": "v3.15.2"`
	`308`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`309`	`309`	`}`
`310`	`310`	`},`
`311`	`311`	`[`
Original file line number	Diff line number	Diff line change
`@@ -134,7 +134,7 @@`
`134`	`134`	`"untar": 1.34`
`135`	`135`	`},`
`136`	`136`	`"Workflow": {`
`137`		`- "nf-core/rnaseq": "v3.15.2"`
	`137`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`138`	`138`	`}`
`139`	`139`	`},`
`140`	`140`	`[`
`@@ -1321,7 +1321,7 @@`
`1321`	`1321`	`"untar": 1.34`
`1322`	`1322`	`},`
`1323`	`1323`	`"Workflow": {`
`1324`		`- "nf-core/rnaseq": "v3.15.2"`
	`1324`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`1325`	`1325`	`}`
`1326`	`1326`	`},`
`1327`	`1327`	`[`
Original file line number	Diff line number	Diff line change
`@@ -140,7 +140,7 @@`
`140`	`140`	`"untar": 1.34`
`141`	`141`	`},`
`142`	`142`	`"Workflow": {`
`143`		`- "nf-core/rnaseq": "v3.15.2"`
	`143`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`144`	`144`	`}`
`145`	`145`	`},`
`146`	`146`	`[`
`@@ -1571,7 +1571,7 @@`
`1571`	`1571`	`"untar": 1.34`
`1572`	`1572`	`},`
`1573`	`1573`	`"Workflow": {`
`1574`		`- "nf-core/rnaseq": "v3.15.2"`
	`1574`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`1575`	`1575`	`}`
`1576`	`1576`	`},`
`1577`	`1577`	`[`
Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@`
`50`	`50`	`"untar": 1.34`
`51`	`51`	`},`
`52`	`52`	`"Workflow": {`
`53`		`- "nf-core/rnaseq": "v3.15.2"`
	`53`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`54`	`54`	`}`
`55`	`55`	`},`
`56`	`56`	`[`
`@@ -378,7 +378,7 @@`
`378`	`378`	`"untar": 1.34`
`379`	`379`	`},`
`380`	`380`	`"Workflow": {`
`381`		`- "nf-core/rnaseq": "v3.15.2"`
	`381`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`382`	`382`	`}`
`383`	`383`	`},`
`384`	`384`	`[`
Original file line number	Diff line number	Diff line change
`@@ -40,7 +40,7 @@`
`40`	`40`	`"untar": 1.34`
`41`	`41`	`},`
`42`	`42`	`"Workflow": {`
`43`		`- "nf-core/rnaseq": "v3.15.2"`
	`43`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`44`	`44`	`}`
`45`	`45`	`},`
`46`	`46`	`[`
`@@ -169,7 +169,7 @@`
`169`	`169`	`"untar": 1.34`
`170`	`170`	`},`
`171`	`171`	`"Workflow": {`
`172`		`- "nf-core/rnaseq": "v3.15.2"`
	`172`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`173`	`173`	`}`
`174`	`174`	`},`
`175`	`175`	`[`
Original file line number	Diff line number	Diff line change
`@@ -130,7 +130,7 @@`
`130`	`130`	`"untar": 1.34`
`131`	`131`	`},`
`132`	`132`	`"Workflow": {`
`133`		`- "nf-core/rnaseq": "v3.15.2"`
	`133`	`+ "nf-core/rnaseq": "v3.16.0dev"`
`134`	`134`	`}`
`135`	`135`	`},`
`136`	`136`	`[`