Don't put STDERR in versions string for UMITOOLS_PREPAREFORRSEM

pinin4fjords · pinin4fjords · commit 2e721100a37c · 2023-12-22T16:40:16.000Z
diff --git a/modules/local/umitools_prepareforrsem/main.nf b/modules/local/umitools_prepareforrsem/main.nf
@@ -30,7 +30,7 @@ process UMITOOLS_PREPAREFORRSEM {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        umitools: \$(umi_tools --version 2>&1 | sed 's/^.*UMI-tools version://; s/ *\$//')
+        umitools: \$(umi_tools --version | sed 's/^.*UMI-tools version://; s/ *\$//')
     END_VERSIONS
     """
 }

Original file line number	Diff line number	Diff line change
`@@ -30,7 +30,7 @@ process UMITOOLS_PREPAREFORRSEM {`
`30`	`30`
`31`	`31`	`cat <<-END_VERSIONS > versions.yml`
`32`	`32`	`"${task.process}":`
`33`		`- umitools: \$(umi_tools --version 2>&1 \| sed 's/^.UMI-tools version://; s/ \$//')`
	`33`	`+ umitools: \$(umi_tools --version \| sed 's/^.UMI-tools version://; s/ \$//')`
`34`	`34`	`END_VERSIONS`
`35`	`35`	`"""`
`36`	`36`	`}`