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clean up stub tests
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tests/default.nf.test

Lines changed: 1 addition & 17 deletions
Original file line numberDiff line numberDiff line change
@@ -47,23 +47,7 @@ nextflow_pipeline {
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then {
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assertAll(
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{ assert workflow.success },
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{ assert snapshot(
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UTILS.removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
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// path("${params.outdir}/custom/out/genome_gfp.fasta"),
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// path("${params.outdir}/custom/out/genome_gfp.gtf"),
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// path("${params.outdir}/salmon/salmon.merged.transcript_counts.tsv"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_IAA_30M_REP1.forward.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_IAA_30M_REP1.reverse.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_UNINDUCED_REP1.forward.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_UNINDUCED_REP1.reverse.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_UNINDUCED_REP2.forward.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/RAP1_UNINDUCED_REP2.reverse.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/WT_REP1.forward.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/WT_REP1.reverse.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/WT_REP2.forward.bigWig"),
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// path("${params.outdir}/star_salmon/bigwig/WT_REP2.reverse.bigWig")
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).match()
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}
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{ assert snapshot(UTILS.removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml")).match() }
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)
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}
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}

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