ignore file

Author: maxulysse

tests/.nftignore

@@ -5,9 +5,6 @@ kallisto/*/abundance.{h5,tsv}
 kallisto/*/kallisto_quant.log
 kallisto/*/run_info.json
 kallisto/kallisto.*
-multiqc/hisat2/multiqc_report_data/hisat2_pe_plot.txt
-multiqc/hisat2/multiqc_report_data/hisat2_se_plot.txt
-multiqc/hisat2/multiqc_report_data/multiqc_hisat2.txt
 pipeline_info/*.{html,json,txt,yml}
 sortmerna/*.sortmerna.log
 star_rsem/*.stat/*.{cnt,model,theta}
@@ -35,6 +32,8 @@ trimgalore/*fastq.gz_trimming_report.txt
 {hisat2,star_rsem,star_salmon}/stringtie/*.{coverage,transcripts}.gtf
 {multiqc,multiqc/**}/multiqc_report.html
 {multiqc,multiqc/**}/multiqc_report_data/fastqc_{raw,trimmed}_top_overrepresented_sequences_table.txt
+{multiqc,multiqc/**}/multiqc_report_data/hisat2_pe_plot.txt
+{multiqc,multiqc/**}/multiqc_report_data/hisat2_se_plot.txt
 {multiqc,multiqc/**}/multiqc_report_data/junction_saturation_known.txt
 {multiqc,multiqc/**}/multiqc_report_data/junction_saturation_novel.txt
 {multiqc,multiqc/**}/multiqc_report_data/kallisto_alignment.txt
@@ -43,6 +42,7 @@ trimgalore/*fastq.gz_trimming_report.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_dupradar.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_fail_strand_check_table.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_general_stats.txt
+{multiqc,multiqc/**}/multiqc_report_data/multiqc_hisat2.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_kallisto.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_picard_dups.txt
 {multiqc,multiqc/**}/multiqc_report_data/multiqc_rsem.txt
@@ -61,6 +61,7 @@ trimgalore/*fastq.gz_trimming_report.txt
 {multiqc,multiqc/**}/multiqc_report_data/qualimap_genomic_origin.txt
 {multiqc,multiqc/**}/multiqc_report_data/qualimap_rnaseq_genome_results.txt
 {multiqc,multiqc/**}/multiqc_report_data/rsem_assignment_plot.txt
+{multiqc,multiqc/**}/multiqc_report_data/rsem_multimapping_rates.txt
 {multiqc,multiqc/**}/multiqc_report_data/rseqc_bam_stat.txt
 {multiqc,multiqc/**}/multiqc_report_data/rseqc_inner_distance*.txt
 {multiqc,multiqc/**}/multiqc_report_data/rseqc_junction_{annotation,saturation}_*.txt

tests/star_rsem.nf.test.snap

@@ -1158,7 +1158,6 @@
                 "qualimap_gene_coverage_profile_Counts.txt:md5,387c07f2a93e3d13048c4cd788d1fcc3",
                 "qualimap_gene_coverage_profile_Normalised.txt:md5,35f0b71796622269bc51cf1e7a0650ab",
                 "qualimap_rnaseq_cov_hist.txt:md5,a620cb9d1878e86e10e87500e98122f1",
-                "rsem_multimapping_rates.txt:md5,05878dd307fa1666dd4cc1888de6257a",
                 "rseqc_infer_experiment_plot.txt:md5,c0ddf72b026cdc54ad03e75eaa636f7e",
                 "samtools-idxstats-mapped-reads-plot_Normalised_Counts.txt:md5,75acd04232d1804b5f960ee4c5db4722",
                 "samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts.txt:md5,3e67e07b5c978fa363965e8e90356eef",
@@ -1365,4 +1364,4 @@
         },
         "timestamp": "2024-10-10T11:41:09.240442"
     }
-}
+}