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fix GHA
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.github/workflows/ci.yml

Lines changed: 3 additions & 6 deletions
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@@ -100,12 +100,6 @@ jobs:
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echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
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echo $(realpath python) >> $GITHUB_PATH
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- name: Clean up Disk space
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uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
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- name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
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run: |
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nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
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- name: Install nf-test
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uses: nf-core/setup-nf-test@v1
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with:
@@ -121,6 +115,9 @@ jobs:
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python -m pip install --upgrade pip
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pip install pdiff
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- name: Clean up Disk space
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uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
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- name: Run nf-test
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run: |
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nf-test test --verbose ${{ matrix.nf_test_files }} --profile "+${{ matrix.profile }}" --junitxml=test.xml --tap=test.tap

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