Replace ccurve with lc_extrap for PRESEQ_LCEXTRAP

Author: drpatelh

assets/multiqc_config.yml

@@ -81,7 +81,7 @@ sp:
     fn: "meta_info.json"
 
   preseq:
-    fn: "*.ccurve.txt"
+    fn: "*.lc_extrap.txt"
 
   samtools/stats:
     fn: "*.stats"

docs/output.md

@@ -563,7 +563,7 @@ See [dupRadar docs](https://www.bioconductor.org/packages/devel/bioc/vignettes/d
 <summary>Output files</summary>
 
 - `<ALIGNER>/preseq/`
-  - `*.ccurve.txt`: Preseq expected future yield file.
+  - `*.lc_extrap.txt`: Preseq expected future yield file.
 - `<ALIGNER>/preseq/log/`
   - `*.command.log`: Standard error output from command.
 

workflows/rnaseq.nf

@@ -482,7 +482,7 @@ workflow RNASEQ {
         PRESEQ_LCEXTRAP (
             ch_genome_bam
         )
-        ch_preseq_multiqc = PRESEQ_LCEXTRAP.out.ccurve
+        ch_preseq_multiqc = PRESEQ_LCEXTRAP.out.lc_extrap
         ch_versions = ch_versions.mix(PRESEQ_LCEXTRAP.out.versions.first())
     }