fix statement

maxulysse · maxulysse · commit 4675be06b66c · 2023-11-09T18:52:38.000+01:00
diff --git a/conf/modules.config b/conf/modules.config
@@ -428,7 +428,7 @@ if (!params.skip_alignment) {
                         path: { "${params.outdir}/${params.aligner}" },
                         mode: params.publish_dir_mode,
                         pattern: '*.bam',
-                        saveAs: { params.save_align_intermeds || params.with_umi || params.save_umi_intermeds }
+                        saveAs: { params.save_align_intermeds || params.with_umi || params.save_umi_intermeds ? it : null }
                     ]
                 ]
             }
@@ -440,7 +440,7 @@ if (!params.skip_alignment) {
                     path: { "${params.outdir}/${params.aligner}" },
                     mode: params.publish_dir_mode,
                     pattern: '*.{bai,csi}',
-                    saveAs: { params.save_align_intermeds || params.with_umi || params.save_umi_intermeds }
+                    saveAs: { params.save_align_intermeds || params.with_umi || params.save_umi_intermeds ? it : null }
                 ]
             }
 

Original file line number	Diff line number	Diff line change
`@@ -428,7 +428,7 @@ if (!params.skip_alignment) {`
`428`	`428`	`path: { "${params.outdir}/${params.aligner}" },`
`429`	`429`	`mode: params.publish_dir_mode,`
`430`	`430`	`pattern: '*.bam',`
`431`		`- saveAs: { params.save_align_intermeds \|\| params.with_umi \|\| params.save_umi_intermeds }`
	`431`	`+ saveAs: { params.save_align_intermeds \|\| params.with_umi \|\| params.save_umi_intermeds ? it : null }`
`432`	`432`	`]`
`433`	`433`	`]`
`434`	`434`	`}`
`@@ -440,7 +440,7 @@ if (!params.skip_alignment) {`
`440`	`440`	`path: { "${params.outdir}/${params.aligner}" },`
`441`	`441`	`mode: params.publish_dir_mode,`
`442`	`442`	`pattern: '*.{bai,csi}',`
`443`		`- saveAs: { params.save_align_intermeds \|\| params.with_umi \|\| params.save_umi_intermeds }`
	`443`	`+ saveAs: { params.save_align_intermeds \|\| params.with_umi \|\| params.save_umi_intermeds ? it : null }`
`444`	`444`	`]`
`445`	`445`	`}`
`446`	`446`