Update PIPELINE_INITIALISATION test to include new help parameters

pinin4fjords · pinin4fjords · commit 4925141414ce · 2025-11-13T10:55:27.000Z
diff --git a/subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test b/subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test
@@ -33,6 +33,10 @@ nextflow_workflow {
                 input[2] = true                 // monochrome_logs (boolean)
                 input[3] = args                 // args (array)
                 input[4] = file("$outputDir")   // outdir (string)
+                input[5] = null                 // input (string)
+                input[6] = false                // help (boolean)
+                input[7] = false                // help_full (boolean)
+                input[8] = false                // show_hidden (boolean)
                 """
             }
         }

Original file line number	Diff line number	Diff line change
`@@ -33,6 +33,10 @@ nextflow_workflow {`
`33`	`33`	`input[2] = true // monochrome_logs (boolean)`
`34`	`34`	`input[3] = args // args (array)`
`35`	`35`	`input[4] = file("$outputDir") // outdir (string)`
	`36`	`+ input[5] = null // input (string)`
	`37`	`+ input[6] = false // help (boolean)`
	`38`	`+ input[7] = false // help_full (boolean)`
	`39`	`+ input[8] = false // show_hidden (boolean)`
`36`	`40`	`"""`
`37`	`41`	`}`
`38`	`42`	`}`