kallisto: update snapshots

Author: maxulysse

tests/kallisto.nf.test.snap

@@ -133,18 +133,19 @@
                 "multiqc/multiqc_report_data/cutadapt_filtered_reads_plot.txt",
                 "multiqc/multiqc_report_data/cutadapt_trimmed_sequences_plot_3_Counts.txt",
                 "multiqc/multiqc_report_data/cutadapt_trimmed_sequences_plot_3_Obs_Exp.txt",
-                "multiqc/multiqc_report_data/fastqc-status-check-heatmap.txt",
-                "multiqc/multiqc_report_data/fastqc_overrepresented_sequences_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_per_base_n_content_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_per_base_sequence_quality_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_per_sequence_gc_content_plot_Counts.txt",
-                "multiqc/multiqc_report_data/fastqc_per_sequence_gc_content_plot_Percentages.txt",
-                "multiqc/multiqc_report_data/fastqc_per_sequence_quality_scores_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_sequence_counts_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_sequence_duplication_levels_plot.txt",
                 "multiqc/multiqc_report_data/fastqc_sequence_length_distribution_plot.txt",
-                "multiqc/multiqc_report_data/fastqc_top_overrepresented_sequences_table.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed-status-check-heatmap.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_overrepresented_sequences_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_per_base_n_content_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_per_base_sequence_quality_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_per_sequence_gc_content_plot_Counts.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_per_sequence_gc_content_plot_Percentages.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_per_sequence_quality_scores_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_sequence_counts_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_sequence_duplication_levels_plot.txt",
+                "multiqc/multiqc_report_data/fastqc_trimmed_top_overrepresented_sequences_table.txt",
                 "multiqc/multiqc_report_data/kallisto_alignment.txt",
+                "multiqc/multiqc_report_data/multiqc.log",
                 "multiqc/multiqc_report_data/multiqc_citations.txt",
                 "multiqc/multiqc_report_data/multiqc_cutadapt.txt",
                 "multiqc/multiqc_report_data/multiqc_data.json",
@@ -159,18 +160,18 @@
                 "multiqc/multiqc_report_plots/pdf/cutadapt_filtered_reads_plot-pct.pdf",
                 "multiqc/multiqc_report_plots/pdf/cutadapt_trimmed_sequences_plot_3_Counts.pdf",
                 "multiqc/multiqc_report_plots/pdf/cutadapt_trimmed_sequences_plot_3_Obs_Exp.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc-status-check-heatmap.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_overrepresented_sequences_plot.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_per_base_n_content_plot.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
                 "multiqc/multiqc_report_plots/pdf/fastqc_sequence_length_distribution_plot.pdf",
-                "multiqc/multiqc_report_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed-status-check-heatmap.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_overrepresented_sequences_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_per_base_n_content_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_per_base_sequence_quality_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_per_sequence_gc_content_plot_Counts.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_per_sequence_gc_content_plot_Percentages.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_per_sequence_quality_scores_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_sequence_counts_plot-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_sequence_counts_plot-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_sequence_duplication_levels_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/fastqc_trimmed_top_overrepresented_sequences_table.pdf",
                 "multiqc/multiqc_report_plots/pdf/general_stats_table.pdf",
                 "multiqc/multiqc_report_plots/pdf/kallisto_alignment-cnt.pdf",
                 "multiqc/multiqc_report_plots/pdf/kallisto_alignment-pct.pdf",
@@ -179,18 +180,18 @@
                 "multiqc/multiqc_report_plots/png/cutadapt_filtered_reads_plot-pct.png",
                 "multiqc/multiqc_report_plots/png/cutadapt_trimmed_sequences_plot_3_Counts.png",
                 "multiqc/multiqc_report_plots/png/cutadapt_trimmed_sequences_plot_3_Obs_Exp.png",
-                "multiqc/multiqc_report_plots/png/fastqc-status-check-heatmap.png",
-                "multiqc/multiqc_report_plots/png/fastqc_overrepresented_sequences_plot.png",
-                "multiqc/multiqc_report_plots/png/fastqc_per_base_n_content_plot.png",
-                "multiqc/multiqc_report_plots/png/fastqc_per_base_sequence_quality_plot.png",
-                "multiqc/multiqc_report_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
-                "multiqc/multiqc_report_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
-                "multiqc/multiqc_report_plots/png/fastqc_per_sequence_quality_scores_plot.png",
-                "multiqc/multiqc_report_plots/png/fastqc_sequence_counts_plot-cnt.png",
-                "multiqc/multiqc_report_plots/png/fastqc_sequence_counts_plot-pct.png",
-                "multiqc/multiqc_report_plots/png/fastqc_sequence_duplication_levels_plot.png",
                 "multiqc/multiqc_report_plots/png/fastqc_sequence_length_distribution_plot.png",
-                "multiqc/multiqc_report_plots/png/fastqc_top_overrepresented_sequences_table.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed-status-check-heatmap.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_overrepresented_sequences_plot.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_per_base_n_content_plot.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_per_base_sequence_quality_plot.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_per_sequence_gc_content_plot_Counts.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_per_sequence_gc_content_plot_Percentages.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_per_sequence_quality_scores_plot.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_sequence_counts_plot-cnt.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_sequence_counts_plot-pct.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_sequence_duplication_levels_plot.png",
+                "multiqc/multiqc_report_plots/png/fastqc_trimmed_top_overrepresented_sequences_table.png",
                 "multiqc/multiqc_report_plots/png/general_stats_table.png",
                 "multiqc/multiqc_report_plots/png/kallisto_alignment-cnt.png",
                 "multiqc/multiqc_report_plots/png/kallisto_alignment-pct.png",
@@ -199,18 +200,18 @@
                 "multiqc/multiqc_report_plots/svg/cutadapt_filtered_reads_plot-pct.svg",
                 "multiqc/multiqc_report_plots/svg/cutadapt_trimmed_sequences_plot_3_Counts.svg",
                 "multiqc/multiqc_report_plots/svg/cutadapt_trimmed_sequences_plot_3_Obs_Exp.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc-status-check-heatmap.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_overrepresented_sequences_plot.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_per_base_n_content_plot.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_sequence_counts_plot-pct.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
                 "multiqc/multiqc_report_plots/svg/fastqc_sequence_length_distribution_plot.svg",
-                "multiqc/multiqc_report_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed-status-check-heatmap.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_overrepresented_sequences_plot.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_per_base_n_content_plot.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_per_base_sequence_quality_plot.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_per_sequence_gc_content_plot_Counts.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_per_sequence_gc_content_plot_Percentages.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_per_sequence_quality_scores_plot.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_sequence_counts_plot-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_sequence_counts_plot-pct.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_sequence_duplication_levels_plot.svg",
+                "multiqc/multiqc_report_plots/svg/fastqc_trimmed_top_overrepresented_sequences_table.svg",
                 "multiqc/multiqc_report_plots/svg/general_stats_table.svg",
                 "multiqc/multiqc_report_plots/svg/kallisto_alignment-cnt.svg",
                 "multiqc/multiqc_report_plots/svg/kallisto_alignment-pct.svg",
@@ -230,41 +231,31 @@
                 "genome_gfp.fasta:md5,e23e302af63736a199985a169fdac055",
                 "genome_gfp.gtf:md5,c98b12c302f15731bfc36bcf297cfe28",
                 "tx2gene.tsv:md5,0e2418a69d2eba45097ebffc2f700bfe",
-                "cutadapt_filtered_reads_plot.txt:md5,bf033e64e9d23bee85b6277f11c663f1",
+                "cutadapt_filtered_reads_plot.txt:md5,6fa381627f7c1f664f3d4b2cb79cce90",
                 "cutadapt_trimmed_sequences_plot_3_Counts.txt:md5,13dfa866fd91dbb072689efe9aa83b1f",
                 "cutadapt_trimmed_sequences_plot_3_Obs_Exp.txt:md5,07145dd8dd3db654859b18eb0389046c",
-                "fastqc-status-check-heatmap.txt:md5,22a03548736b88b23be6bc0c9ef1b4a6",
-                "fastqc_overrepresented_sequences_plot.txt:md5,4adfeacd3a3a6c7c808f121b24e6b247",
-                "fastqc_per_base_n_content_plot.txt:md5,418610c1ce119cb786ad434db75d366e",
-                "fastqc_per_base_sequence_quality_plot.txt:md5,bd22e06e41c096ad4f745d40fe96a1e5",
-                "fastqc_per_sequence_gc_content_plot_Counts.txt:md5,004c60768ceb6197765154e3eaa37b7a",
-                "fastqc_per_sequence_gc_content_plot_Percentages.txt:md5,95d29060b687f745288ad1ec47750037",
-                "fastqc_per_sequence_quality_scores_plot.txt:md5,0f9834cc19f76dd5c87cf8cba7435a7c",
-                "fastqc_sequence_counts_plot.txt:md5,3861354bbedfbde7ca36a72994f9425c",
-                "fastqc_sequence_duplication_levels_plot.txt:md5,c73407d55fc532e864fa1dc8dbc12874",
                 "fastqc_sequence_length_distribution_plot.txt:md5,6fe2c985606abad947bcca99b015ae33",
+                "fastqc_trimmed-status-check-heatmap.txt:md5,22a03548736b88b23be6bc0c9ef1b4a6",
+                "fastqc_trimmed_overrepresented_sequences_plot.txt:md5,4adfeacd3a3a6c7c808f121b24e6b247",
+                "fastqc_trimmed_per_base_n_content_plot.txt:md5,418610c1ce119cb786ad434db75d366e",
+                "fastqc_trimmed_per_base_sequence_quality_plot.txt:md5,bd22e06e41c096ad4f745d40fe96a1e5",
+                "fastqc_trimmed_per_sequence_gc_content_plot_Counts.txt:md5,004c60768ceb6197765154e3eaa37b7a",
+                "fastqc_trimmed_per_sequence_gc_content_plot_Percentages.txt:md5,95d29060b687f745288ad1ec47750037",
+                "fastqc_trimmed_per_sequence_quality_scores_plot.txt:md5,0f9834cc19f76dd5c87cf8cba7435a7c",
+                "fastqc_trimmed_sequence_counts_plot.txt:md5,6ae4db60425cae4f78b13c798ad1dcf3",
+                "fastqc_trimmed_sequence_duplication_levels_plot.txt:md5,c73407d55fc532e864fa1dc8dbc12874",
+                "fastqc_trimmed_top_overrepresented_sequences_table.txt:md5,ab365cbc66c7a9ec93539494fb401b97",
+                "multiqc.log:md5,8ad099f7085cbd858f2a8feadd603c71",
                 "multiqc_citations.txt:md5,4cece87a056a29c1338277736855e6ee",
                 "multiqc_cutadapt.txt:md5,aac9581a5670cb55edf564f3d6c1f9a7",
-                "multiqc_fastqc_fastqc_trimmed.txt:md5,a3238f515e01d158d875d69968753804",
-                "cutadapt_filtered_reads_plot-cnt.png:md5,704cf0d91bfa3dd658dd8c9590f669a2",
-                "cutadapt_filtered_reads_plot-pct.png:md5,2684d8b2afca3300e5786486b80237f0",
-                "cutadapt_trimmed_sequences_plot_3_Counts.png:md5,bef41d894629b0c4dab4478bbf197f50",
-                "cutadapt_trimmed_sequences_plot_3_Obs_Exp.png:md5,1e0d01537d3797623d0b3fd8fbe42787",
-                "fastqc-status-check-heatmap.png:md5,2402522f8c02e12aea9af088c6595890",
-                "fastqc_overrepresented_sequences_plot.png:md5,40e450251b80ec0efc9364434234ec7f",
-                "fastqc_per_sequence_gc_content_plot_Counts.png:md5,8a806cec2142f9911502e0a253d83d13",
-                "fastqc_per_sequence_gc_content_plot_Percentages.png:md5,953929d50c8490029880e205e4db7959",
-                "fastqc_per_sequence_quality_scores_plot.png:md5,d2c29cae169f35744500c751b4a7366e",
-                "fastqc_sequence_counts_plot-cnt.png:md5,2874fea747c7ff46828bf4f17668caf8",
-                "fastqc_sequence_counts_plot-pct.png:md5,0022d7f5ac78b6eff157de24e37c5ab0",
-                "fastqc_sequence_duplication_levels_plot.png:md5,fcd3b1ec2b95fe4bcd607dc28179a754"
+                "multiqc_fastqc_fastqc_trimmed.txt:md5,26528b0b0d3df6304b80ca8f09619233"
             ]
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.4"
+            "nextflow": "24.09.0"
         },
-        "timestamp": "2024-10-02T07:46:44.393695"
+        "timestamp": "2024-10-09T19:19:07.816437"
     },
     "Params: --pseudo_aligner kallisto --skip_qc --skip_alignment - stub": {
         "content": [
@@ -333,13 +324,14 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.4"
+            "nextflow": "24.09.0"
         },
-        "timestamp": "2024-10-02T07:47:31.044439"
+        "timestamp": "2024-10-09T18:56:35.320816"
     }
-}
+}