Commit 54721c6
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56 files changed
+170
-137
lines changed- modules/nf-core
- bbmap/bbsplit
- cat/fastq
- custom
- dumpsoftwareversions
- templates
- getchromsizes
- fastp
- fastqc
- fq/subsample
- gffread
- gunzip
- hisat2
- build
- extractsplicesites
- picard/markduplicates
- preseq/lcextrap
- qualimap/rnaseq
- rseqc
- bamstat
- inferexperiment
- innerdistance
- junctionannotation
- junctionsaturation
- readdistribution
- readduplication
- tin
- salmon
- index
- quant
- samtools
- flagstat
- idxstats
- index
- sort
- stats
- sortmerna
- star/align
- stringtie/stringtie
- subread/featurecounts
- trimgalore
- ucsc
- bedclip
- bedgraphtobigwig
- umitools
- dedup
- extract
- untar
- subworkflows/nf-core
- bam_dedup_stats_samtools_umitools
- bam_markduplicates_picard
- bam_rseqc
- bam_sort_stats_samtools
- bam_stats_samtools
- bedgraph_bedclip_bedgraphtobigwig
- fastq_align_hisat2
- fastq_fastqc_umitools_fastp
- fastq_fastqc_umitools_trimgalore
- fastq_subsample_fq_salmon
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