Add missing files in bam_input snap

Author: pinin4fjords

tests/bam_input.nf.test.snap

@@ -150,8 +150,113 @@
                 "multiqc/multiqc_report_data/samtools_alignment_plot.txt",
                 "multiqc/multiqc_report_plots",
                 "multiqc/multiqc_report_plots/pdf",
+                "multiqc/multiqc_report_plots/pdf/dupradar.pdf",
+                "multiqc/multiqc_report_plots/pdf/fail_strand_check_table.pdf",
+                "multiqc/multiqc_report_plots/pdf/featurecounts_biotype_plot-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/featurecounts_biotype_plot-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/picard_deduplication-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/picard_deduplication-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/qualimap_gene_coverage_profile_Counts.pdf",
+                "multiqc/multiqc_report_plots/pdf/qualimap_gene_coverage_profile_Normalised.pdf",
+                "multiqc/multiqc_report_plots/pdf/qualimap_genomic_origin-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/qualimap_genomic_origin-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_bam_stat.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_infer_experiment_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_inner_distance_plot_Counts.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_inner_distance_plot_Percentages.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_annotation_junctions_plot_Events-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_annotation_junctions_plot_Events-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_annotation_junctions_plot_Junctions-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_annotation_junctions_plot_Junctions-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_saturation_plot_All_Junctions.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_saturation_plot_Known_Junctions.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_junction_saturation_plot_Novel_Junctions.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_read_distribution_plot-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_read_distribution_plot-pct.pdf",
+                "multiqc/multiqc_report_plots/pdf/rseqc_read_dups_plot.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-flagstat-pct-table.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-flagstat-table.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Normalised_Counts-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Normalised_Counts-log.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-log.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Raw_Counts-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-idxstats-mapped-reads-plot_Raw_Counts-log.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools-stats-dp.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools_alignment_plot-cnt.pdf",
+                "multiqc/multiqc_report_plots/pdf/samtools_alignment_plot-pct.pdf",
                 "multiqc/multiqc_report_plots/png",
+                "multiqc/multiqc_report_plots/png/dupradar.png",
+                "multiqc/multiqc_report_plots/png/fail_strand_check_table.png",
+                "multiqc/multiqc_report_plots/png/featurecounts_biotype_plot-cnt.png",
+                "multiqc/multiqc_report_plots/png/featurecounts_biotype_plot-pct.png",
+                "multiqc/multiqc_report_plots/png/picard_deduplication-cnt.png",
+                "multiqc/multiqc_report_plots/png/picard_deduplication-pct.png",
+                "multiqc/multiqc_report_plots/png/qualimap_gene_coverage_profile_Counts.png",
+                "multiqc/multiqc_report_plots/png/qualimap_gene_coverage_profile_Normalised.png",
+                "multiqc/multiqc_report_plots/png/qualimap_genomic_origin-cnt.png",
+                "multiqc/multiqc_report_plots/png/qualimap_genomic_origin-pct.png",
+                "multiqc/multiqc_report_plots/png/rseqc_bam_stat.png",
+                "multiqc/multiqc_report_plots/png/rseqc_infer_experiment_plot.png",
+                "multiqc/multiqc_report_plots/png/rseqc_inner_distance_plot_Counts.png",
+                "multiqc/multiqc_report_plots/png/rseqc_inner_distance_plot_Percentages.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_annotation_junctions_plot_Events-cnt.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_annotation_junctions_plot_Events-pct.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_annotation_junctions_plot_Junctions-cnt.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_annotation_junctions_plot_Junctions-pct.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_saturation_plot_All_Junctions.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_saturation_plot_Known_Junctions.png",
+                "multiqc/multiqc_report_plots/png/rseqc_junction_saturation_plot_Novel_Junctions.png",
+                "multiqc/multiqc_report_plots/png/rseqc_read_distribution_plot-cnt.png",
+                "multiqc/multiqc_report_plots/png/rseqc_read_distribution_plot-pct.png",
+                "multiqc/multiqc_report_plots/png/rseqc_read_dups_plot.png",
+                "multiqc/multiqc_report_plots/png/samtools-flagstat-pct-table.png",
+                "multiqc/multiqc_report_plots/png/samtools-flagstat-table.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Normalised_Counts-cnt.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Normalised_Counts-log.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-cnt.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-log.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Raw_Counts-cnt.png",
+                "multiqc/multiqc_report_plots/png/samtools-idxstats-mapped-reads-plot_Raw_Counts-log.png",
+                "multiqc/multiqc_report_plots/png/samtools-stats-dp.png",
+                "multiqc/multiqc_report_plots/png/samtools_alignment_plot-cnt.png",
+                "multiqc/multiqc_report_plots/png/samtools_alignment_plot-pct.png",
                 "multiqc/multiqc_report_plots/svg",
+                "multiqc/multiqc_report_plots/svg/dupradar.svg",
+                "multiqc/multiqc_report_plots/svg/fail_strand_check_table.svg",
+                "multiqc/multiqc_report_plots/svg/featurecounts_biotype_plot-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/featurecounts_biotype_plot-pct.svg",
+                "multiqc/multiqc_report_plots/svg/picard_deduplication-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/picard_deduplication-pct.svg",
+                "multiqc/multiqc_report_plots/svg/qualimap_gene_coverage_profile_Counts.svg",
+                "multiqc/multiqc_report_plots/svg/qualimap_gene_coverage_profile_Normalised.svg",
+                "multiqc/multiqc_report_plots/svg/qualimap_genomic_origin-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/qualimap_genomic_origin-pct.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_bam_stat.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_infer_experiment_plot.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_inner_distance_plot_Counts.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_inner_distance_plot_Percentages.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_annotation_junctions_plot_Events-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_annotation_junctions_plot_Events-pct.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_annotation_junctions_plot_Junctions-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_annotation_junctions_plot_Junctions-pct.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_saturation_plot_All_Junctions.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_saturation_plot_Known_Junctions.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_junction_saturation_plot_Novel_Junctions.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_read_distribution_plot-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_read_distribution_plot-pct.svg",
+                "multiqc/multiqc_report_plots/svg/rseqc_read_dups_plot.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-flagstat-pct-table.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-flagstat-table.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Normalised_Counts-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Normalised_Counts-log.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts-log.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Raw_Counts-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-idxstats-mapped-reads-plot_Raw_Counts-log.svg",
+                "multiqc/multiqc_report_plots/svg/samtools-stats-dp.svg",
+                "multiqc/multiqc_report_plots/svg/samtools_alignment_plot-cnt.svg",
+                "multiqc/multiqc_report_plots/svg/samtools_alignment_plot-pct.svg",
                 "pipeline_info",
                 "pipeline_info/nf_core_rnaseq_software_mqc_versions.yml",
                 "samtools",
@@ -695,8 +800,8 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-09T17:43:37.233952"
+        "timestamp": "2025-09-09T19:13:13.065436646"
     }
 }