Merge branch 'dev' into json-schema-improvements

Author: pinin4fjords

CHANGELOG.md

@@ -17,6 +17,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [PR #1499](https://github.com/nf-core/rnaseq/pull/1499) - Bump MultiQC module to 1.27
 - [PR #1508](https://github.com/nf-core/rnaseq/pull/1508) - Fix missing Bracken results in the MultiQC report
 - [PR #1528](https://github.com/nf-core/rnaseq/pull/1528) - Improve JSON schema validation files
+- [PR #1523](https://github.com/nf-core/rnaseq/pull/1523) - Update preprocessing subworkflow to fix linting block on trimming
+- [PR #1521](https://github.com/nf-core/rnaseq/pull/1521) - Updated Perl conda package version for local module gtf2bed for Arm compatibility.
 
 # 3.18.0 - 2024-12-19
 

modules.json

@@ -363,7 +363,7 @@
                     },
                     "fastq_qc_trim_filter_setstrandedness": {
                         "branch": "master",
-                        "git_sha": "8a01490596dbe8443bd6bc6ae4207ae9485f33e3",
+                        "git_sha": "a9d1fd8afc427ddc5222c0a0774cb459170005a1",
                         "installed_by": ["subworkflows"]
                     },
                     "fastq_subsample_fq_salmon": {

modules/local/gtf2bed/environment.yml

@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - conda-forge::perl=5.26.2
+  - conda-forge::perl>=5.26.2