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lines changed Original file line number Diff line number Diff line change @@ -44,7 +44,6 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
4444- [ Pseudoalignment and quantification] ( #pseudoalignment-and-quantification )
4545 - [ Salmon] ( #pseudoalignment ) - Wicked fast gene and isoform quantification relative to the transcriptome
4646 - [ Kallisto] ( #pseudoalignment ) - Near-optimal probabilistic RNA-seq quantification
47- Wicked fast gene and isoform quantification relative to the transcriptome
4847- [ Workflow reporting and genomes] ( #workflow-reporting-and-genomes )
4948 - [ Reference genome files] ( #reference-genome-files ) - Saving reference genome indices/files
5049 - [ Pipeline information] ( #pipeline-information ) - Report metrics generated during the workflow execution
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