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1 | 1 | <html> |
2 | | - <head> |
3 | | - <meta charset="utf-8" /> |
4 | | - <meta http-equiv="X-UA-Compatible" content="IE=edge" /> |
5 | | - <meta name="viewport" content="width=device-width, initial-scale=1" /> |
| 2 | +<head> |
| 3 | + <meta charset="utf-8"> |
| 4 | + <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
| 5 | + <meta name="viewport" content="width=device-width, initial-scale=1"> |
6 | 6 |
|
7 | | - <!-- prettier-ignore --> |
8 | | - <meta name="description" content="nf-core/rnaseq: Nextflow RNA-Seq analysis pipeline, part of the nf-core community." /> |
9 | | - <title>nf-core/rnaseq Pipeline Report</title> |
10 | | - </head> |
11 | | - <body> |
12 | | - <div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto"> |
13 | | - <img src="cid:nfcorepipelinelogo" /> |
| 7 | + <meta name="description" content="nf-core/rnaseq: Nextflow RNA-Seq analysis pipeline, part of the nf-core community."> |
| 8 | + <title>nf-core/rnaseq Pipeline Report</title> |
| 9 | +</head> |
| 10 | +<body> |
| 11 | +<div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto;"> |
14 | 12 |
|
15 | | - <h1>nf-core/rnaseq v${version}</h1> |
16 | | - <h2>Run Name: $runName</h2> |
| 13 | +<img src="cid:nfcorepipelinelogo"> |
17 | 14 |
|
18 | | - <% if (!success){ out << """ |
19 | | - <div |
20 | | - style=" |
21 | | - color: #a94442; |
22 | | - background-color: #f2dede; |
23 | | - border-color: #ebccd1; |
24 | | - padding: 15px; |
25 | | - margin-bottom: 20px; |
26 | | - border: 1px solid transparent; |
27 | | - border-radius: 4px; |
28 | | - " |
29 | | - > |
30 | | - <h4 style="margin-top: 0; color: inherit">nf-core/rnaseq execution completed unsuccessfully!</h4> |
| 15 | +<h1>nf-core/rnaseq v${version}</h1> |
| 16 | +<h2>Run Name: $runName</h2> |
| 17 | + |
| 18 | +<% if (!success){ |
| 19 | + out << """ |
| 20 | + <div style="color: #a94442; background-color: #f2dede; border-color: #ebccd1; padding: 15px; margin-bottom: 20px; border: 1px solid transparent; border-radius: 4px;"> |
| 21 | + <h4 style="margin-top:0; color: inherit;">nf-core/rnaseq execution completed unsuccessfully!</h4> |
31 | 22 | <p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p> |
32 | 23 | <p>The full error message was:</p> |
33 | 24 | <pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0">${errorReport}</pre> |
@@ -69,67 +60,26 @@ <h4 style="margin-top: 0; color: inherit">nf-core/rnaseq execution completed wit |
69 | 60 | " |
70 | 61 | > |
71 | 62 | nf-core/rnaseq execution completed successfully! |
72 | | - </div> |
73 | | - """ } %> |
| 63 | + </div> |
| 64 | + """ |
| 65 | +} |
| 66 | +%> |
74 | 67 |
|
75 | | - <p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p> |
76 | | - <p>The command used to launch the workflow was as follows:</p> |
77 | | - <pre |
78 | | - style=" |
79 | | - white-space: pre-wrap; |
80 | | - overflow: visible; |
81 | | - background-color: #ededed; |
82 | | - padding: 15px; |
83 | | - border-radius: 4px; |
84 | | - margin-bottom: 30px; |
85 | | - " |
86 | | - > |
87 | | -$commandLine</pre |
88 | | - > |
| 68 | +<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p> |
| 69 | +<p>The command used to launch the workflow was as follows:</p> |
| 70 | +<pre style="white-space: pre-wrap; overflow: visible; background-color: #ededed; padding: 15px; border-radius: 4px; margin-bottom:30px;">$commandLine</pre> |
89 | 71 |
|
90 | | - <h3>Pipeline Configuration:</h3> |
91 | | - <table |
92 | | - style=" |
93 | | - width: 100%; |
94 | | - max-width: 100%; |
95 | | - border-spacing: 0; |
96 | | - border-collapse: collapse; |
97 | | - border: 0; |
98 | | - margin-bottom: 30px; |
99 | | - " |
100 | | - > |
101 | | - <tbody style="border-bottom: 1px solid #ddd"> |
102 | | - <% out << summary.collect{ k,v -> " |
103 | | - <tr> |
104 | | - <th |
105 | | - style=" |
106 | | - text-align: left; |
107 | | - padding: 8px 0; |
108 | | - line-height: 1.42857143; |
109 | | - vertical-align: top; |
110 | | - border-top: 1px solid #ddd; |
111 | | - " |
112 | | - > |
113 | | - $k |
114 | | - </th> |
115 | | - <td |
116 | | - style=" |
117 | | - text-align: left; |
118 | | - padding: 8px; |
119 | | - line-height: 1.42857143; |
120 | | - vertical-align: top; |
121 | | - border-top: 1px solid #ddd; |
122 | | - " |
123 | | - > |
124 | | - <pre style="white-space: pre-wrap; overflow: visible">$v</pre> |
125 | | - </td> |
126 | | - </tr> |
127 | | - " }.join("\n") %> |
128 | | - </tbody> |
129 | | - </table> |
| 72 | +<h3>Pipeline Configuration:</h3> |
| 73 | +<table style="width:100%; max-width:100%; border-spacing: 0; border-collapse: collapse; border:0; margin-bottom: 30px;"> |
| 74 | + <tbody style="border-bottom: 1px solid #ddd;"> |
| 75 | + <% out << summary.collect{ k,v -> "<tr><th style='text-align:left; padding: 8px 0; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'>$k</th><td style='text-align:left; padding: 8px; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'><pre style='white-space: pre-wrap; overflow: visible;'>$v</pre></td></tr>" }.join("\n") %> |
| 76 | + </tbody> |
| 77 | +</table> |
130 | 78 |
|
131 | | - <p>nf-core/rnaseq</p> |
132 | | - <p><a href="https://github.com/nf-core/rnaseq">https://github.com/nf-core/rnaseq</a></p> |
133 | | - </div> |
134 | | - </body> |
| 79 | +<p>nf-core/rnaseq</p> |
| 80 | +<p><a href="https://github.com/nf-core/rnaseq">https://github.com/nf-core/rnaseq</a></p> |
| 81 | + |
| 82 | +</div> |
| 83 | + |
| 84 | +</body> |
135 | 85 | </html> |
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