@@ -7,14 +7,45 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
77
88### Credits
99
10+ Special thanks to the following for their contributions to the release:
11+
12+ - [ Maxime Garcia] ( https://github.com/maxulysse )
13+ - [ Jonathan Manning] ( https://github.com/pinin4fjords )
14+
1015### Enhancements & fixes
1116
1217- [ PR #1398 ] ( https://github.com/nf-core/rnaseq/pull/1398 ) - Bump pipeline version to 3.17.0dev
18+ - [ PR #1401 ] ( https://github.com/nf-core/rnaseq/pull/1401 ) - Template update for nf-core/tools v3.0.1
1319
1420### Parameters
1521
22+ | Old parameter | New parameter |
23+ | ------------------------------------ | --------------- |
24+ | | ` --help_full ` |
25+ | | ` --show_hidden ` |
26+ | ` --validationFailUnrecognisedParams ` | |
27+ | ` --validationLenientMode ` | |
28+ | ` --validationSchemaIgnoreParams ` | |
29+ | ` --validationShowHiddenParams ` | |
30+
31+ > ** NB:** Parameter has been ** updated** if both old and new parameter information is present.
32+ >
33+ > ** NB:** Parameter has been ** added** if just the new parameter information is present.
34+ >
35+ > ** NB:** Parameter has been ** removed** if new parameter information isn't present.
36+
1637### Software dependencies
1738
39+ | Dependency | Old version | New version |
40+ | ---------- | ----------- | ----------- |
41+ | ` MultiQC ` | 1.24.1 | 1.25.1 |
42+
43+ > ** NB:** Dependency has been ** updated** if both old and new version information is present.
44+ >
45+ > ** NB:** Dependency has been ** added** if just the new version information is present.
46+ >
47+ > ** NB:** Dependency has been ** removed** if new version information isn't present.
48+
1849## [[ 3.16.0] ( https://github.com/nf-core/rnaseq/releases/tag/3.16.0 )] - 2024-10-02
1950
2051### Credits
@@ -58,8 +89,8 @@ Special thanks to the following for their contributions to the release:
5889
5990| Dependency | Old version | New version |
6091| ---------- | ----------- | ----------- |
61- | ` Kraken2 ` | ----------- | 2.1.3 |
62- | ` Bracken ` | ----------- | 2.9 |
92+ | ` Kraken2 ` | | 2.1.3 |
93+ | ` Bracken ` | | 2.9 |
6394
6495> ** NB:** Dependency has been ** updated** if both old and new version information is present.
6596>
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