Merge pull request #1416 from nf-core/maxulysse-patch-1

Properly disable conda pipeline level tests

Author: maxulysse

.github/workflows/ci.yml

@@ -66,27 +66,25 @@ jobs:
           - isMaster: false
             profile: "singularity"
           - profile: "conda"
-            nf_test_files: default.nf.test
+            nf_test_files: "tests/default.nf.test"
           - profile: "conda"
-            nf_test_files: featurecounts_group_type.nf.test
+            nf_test_files: "tests/featurecounts_group_type.nf.test"
           - profile: "conda"
-            nf_test_files: hisat2.nf.test
+            nf_test_files: "tests/hisat2.nf.test"
           - profile: "conda"
-            nf_test_files: kallisto.nf.test
+            nf_test_files: "tests/kallisto.nf.test"
           - profile: "conda"
-            nf_test_files: min_mapped_reads.nf.test
+            nf_test_files: "tests/min_mapped_reads.nf.test"
           - profile: "conda"
-            nf_test_files: nextflow.config
+            nf_test_files: "tests/remove_ribo_rna.nf.test"
           - profile: "conda"
-            nf_test_files: remove_ribo_rna.nf.test
+            nf_test_files: "tests/salmon.nf.test"
           - profile: "conda"
-            nf_test_files: salmon.nf.test
+            nf_test_files: "tests/skip_qc.nf.test"
           - profile: "conda"
-            nf_test_files: skip_qc.nf.test
+            nf_test_files: "tests/skip_trimming.nf.test"
           - profile: "conda"
-            nf_test_files: skip_trimming.nf.test
-          - profile: "conda"
-            nf_test_files: star_rsem.nf.test
+            nf_test_files: "tests/star_rsem.nf.test"
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4

CHANGELOG.md

@@ -22,6 +22,7 @@ Special thanks to the following for their contributions to the release:
 - [PR #1410](https://github.com/nf-core/rnaseq/pull/1410) - Fix issues caused by empty versions from trimming subworkflows
 - [PR #1412](https://github.com/nf-core/rnaseq/pull/1412) - Reset versions back to 3.16.1 for patch release
 - [PR #1415](https://github.com/nf-core/rnaseq/pull/1415) - Disable pipeline level conda tests
+- [PR #1416](https://github.com/nf-core/rnaseq/pull/1416) - Really disable pipeline level conda tests
 
 ### Parameters