Refine logic to check conda/mamba is being used in a profile

drpatelh · drpatelh · commit 77bae50503e7 · 2022-12-13T23:34:56.000Z
diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy
@@ -71,7 +71,7 @@ class WorkflowMain {
         NfcoreTemplate.checkConfigProvided(workflow, log)
 
         // Check that conda channels are set-up correctly
-        if (workflow.profile.contains('conda') || workflow.profile.contains('mamba')) {
+        if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
             Utils.checkCondaChannels(log)
         }
 

Original file line number	Diff line number	Diff line change
`@@ -71,7 +71,7 @@ class WorkflowMain {`
`71`	`71`	`NfcoreTemplate.checkConfigProvided(workflow, log)`
`72`	`72`
`73`	`73`	`// Check that conda channels are set-up correctly`
`74`		`- if (workflow.profile.contains('conda') \|\| workflow.profile.contains('mamba')) {`
	`74`	`+ if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {`
`75`	`75`	`Utils.checkCondaChannels(log)`
`76`	`76`	`}`
`77`	`77`