Extra fix for #907

Author: drpatelh

nextflow.config

@@ -68,8 +68,8 @@ params {
     hisat2_build_memory        = '200.GB'  // Amount of memory required to build HISAT2 index with splice sites
     stringtie_ignore_gtf       = false
     min_mapped_reads           = 5
-    extra_star_args            = null
-    extra_salmon_args          = null
+    extra_star_align_args      = null
+    extra_salmon_quant_args    = null
     save_merged_fastq          = false
     save_unaligned             = false
     save_align_intermeds       = false