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lines changed Original file line number Diff line number Diff line change @@ -66,27 +66,25 @@ jobs:
6666 - isMaster : false
6767 profile : " singularity"
6868 - profile : " conda"
69- nf_test_files : default.nf.test
69+ nf_test_files : " tests/ default.nf.test"
7070 - profile : " conda"
71- nf_test_files : featurecounts_group_type.nf.test
71+ nf_test_files : " tests/ featurecounts_group_type.nf.test"
7272 - profile : " conda"
73- nf_test_files : hisat2.nf.test
73+ nf_test_files : " tests/ hisat2.nf.test"
7474 - profile : " conda"
75- nf_test_files : kallisto.nf.test
75+ nf_test_files : " tests/ kallisto.nf.test"
7676 - profile : " conda"
77- nf_test_files : min_mapped_reads.nf.test
77+ nf_test_files : " tests/ min_mapped_reads.nf.test"
7878 - profile : " conda"
79- nf_test_files : nextflow.config
79+ nf_test_files : " tests/remove_ribo_rna.nf.test "
8080 - profile : " conda"
81- nf_test_files : remove_ribo_rna .nf.test
81+ nf_test_files : " tests/salmon .nf.test"
8282 - profile : " conda"
83- nf_test_files : salmon .nf.test
83+ nf_test_files : " tests/skip_qc .nf.test"
8484 - profile : " conda"
85- nf_test_files : skip_qc .nf.test
85+ nf_test_files : " tests/skip_trimming .nf.test"
8686 - profile : " conda"
87- nf_test_files : skip_trimming.nf.test
88- - profile : " conda"
89- nf_test_files : star_rsem.nf.test
87+ nf_test_files : " tests/star_rsem.nf.test"
9088 steps :
9189 - name : Check out pipeline code
9290 uses : actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
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