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Rename metro maps
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README.md

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@@ -30,7 +30,7 @@ You can find numerous talks on the [nf-core events page](https://nf-co.re/events
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## Pipeline summary
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![nf-core/RNASeq Workflow Diagram](docs/images/pipeline_diagram_grey.png)
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![nf-core/rnaseq metro map](docs/images/nf-core-rnaseq_metro_map_grey.png)
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The SRA download functionality has been removed from the pipeline (`>=3.2`) and ported to an independent workflow called [nf-core/fetchngs](https://nf-co.re/fetchngs). You can provide `--nf_core_pipeline rnaseq` when running nf-core/fetchngs to download and auto-create a samplesheet containing publicly available samples that can be accepted directly as input by this pipeline.
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15. Present QC for raw read, alignment, gene biotype, sample similarity, and strand-specificity checks ([`MultiQC`](http://multiqc.info/), [`R`](https://www.r-project.org/))
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> - **NB:** Quantification isn't performed if using `--aligner hisat2` due to the lack of an appropriate option to calculate accurate expression estimates from HISAT2 derived genomic alignments. However, you can use this route if you have a preference for the alignment, QC and other types of downstream analysis compatible with the output of HISAT2.
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> - **NB:** The `--aligner star_rsem` option will require STAR indices built from version 2.7.6a or later. However, in order to support legacy usage of genomes hosted on AWS iGenomes the `--aligner star_salmon` option requires indices built with STAR 2.6.1d or earlier. Please refer to this [issue](https://github.com/nf-core/rnaseq/issues/498) for further details.
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## Quick Start
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