Merge pull request #1159 from drpatelh/fixes

Bump MultiQC version from 1.17 -> 1.19

Author: drpatelh

CHANGELOG.md

@@ -29,6 +29,7 @@ Special thanks to the following for their contributions to the release:
 - [PR #1152](https://github.com/nf-core/rnaseq/pull/1152) - Bump container versions for tools using Docker V1 manifest ([#1140](https://github.com/nf-core/rnaseq/issues/1140))
 - [PR #1154](https://github.com/nf-core/rnaseq/pull/1154) - Prerelease 3.14.0 fixes ([#1111](https://github.com/nf-core/rnaseq/issues/1111), [#1153](https://github.com/nf-core/rnaseq/issues/1153))
 - [PR #1157](https://github.com/nf-core/rnaseq/pull/1157) - Add slash to `--outdir` for cloud tests to fix Azure validation issue
+- [PR #1159](https://github.com/nf-core/rnaseq/pull/1159) - Issues loading MultiQC report ([#1158](https://github.com/nf-core/rnaseq/issues/1158))
 
 ### Parameters
 
@@ -44,6 +45,7 @@ Special thanks to the following for their contributions to the release:
 
 | Dependency | Old version | New version |
 | ---------- | ----------- | ----------- |
+| `multiqc`  | 1.17        | 1.19        |
 | `qualimap` | 2.2.2d      | 2.3         |
 | `rseqc`    | 3.0.1       | 5.0.3       |
 

modules.json

@@ -18,7 +18,8 @@
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
                         "git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/custom/dumpsoftwareversions/custom-dumpsoftwareversions.diff"
                     },
                     "custom/getchromsizes": {
                         "branch": "master",

modules/local/multiqc/main.nf

@@ -1,10 +1,10 @@
 process MULTIQC {
     label 'process_medium'
 
-    conda "bioconda::multiqc=1.17"
+    conda "bioconda::multiqc=1.19"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.17--pyhdfd78af_1' :
-        'biocontainers/multiqc:1.17--pyhdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/multiqc:1.19--pyhdfd78af_0' :
+        'biocontainers/multiqc:1.19--pyhdfd78af_0' }"
 
     input:
     path multiqc_config