Remove old alignment assertions from rsem test

Author: pinin4fjords

subworkflows/local/quantify_rsem/tests/main.nf.test

@@ -41,16 +41,6 @@ nextflow_workflow {
                     workflow.out.counts_gene,
                     workflow.out.counts_transcript,
                     workflow.out.stat,
-                    workflow.out.bam_star,
-                    workflow.out.bam_genome,
-                    workflow.out.bam_transcript,
-                    workflow.out.counts_transcript,
-                    workflow.out.bam,
-                    workflow.out.bai,
-                    workflow.out.csi,
-                    workflow.out.stats,
-                    workflow.out.flagstat,
-                    workflow.out.idxstats,
                     workflow.out.merged_counts_gene,
                     workflow.out.merged_tpm_gene,
                     workflow.out.merged_counts_transcript,

subworkflows/local/quantify_rsem/tests/main.nf.test.snap

@@ -262,24 +262,6 @@
                     ]
                 ]
             ],
-            null,
-            null,
-            null,
-            [
-                [
-                    {
-                        "id": "test",
-                        "strandedness": "forward"
-                    },
-                    "test.isoforms.results:md5,99f7f80aa505b44ca429fdebbd7dd5d8"
-                ]
-            ],
-            null,
-            null,
-            null,
-            null,
-            null,
-            null,
             [
                 "rsem.merged.gene_counts.tsv:md5,f3b586000c97c89aec45360772e73df1"
             ],
@@ -299,8 +281,8 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-15T16:58:29.023915"
+        "timestamp": "2025-09-16T08:19:00.078928064"
     }
 }