Merge pull request #1116 from nf-core/maxime_feedback

Maxime feedback

Author: pinin4fjords

CHANGELOG.md

@@ -53,6 +53,17 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 >
 > **NB:** Dependency has been **removed** if new version information isn't present.
 
+### Modules / Subworkflows
+
+| Script                   | Old name          | New name                    |
+| ------------------------ | ----------------- | --------------------------- |
+| `local/gtf_filter`       | `GTF_GENE_FILTER` | `GTF_FILTER`                |
+| `local/tx2gene`          | `SALMON_TX2GENE`  | `TX2GENE`                   |
+| `local/tximport`         | `SALMON_TXIMPORT` | `TXIMPORT`                  |
+| `local/quantify_salmon`  | `QUANTIFY_SALMON` | `QUANTIFY_PSEUDO_ALIGNMENT` |
+| `nf-core/kallisto_index` |                   | `KALLISTO_INDEX`            |
+| `nf-core/kallisto_quant` |                   | `KALLISTO_QUANT`            |
+
 ## [[3.12.0](https://github.com/nf-core/rnaseq/releases/tag/3.12.0)] - 2023-06-02
 
 ### Credits

assets/slackreport.json

@@ -3,7 +3,7 @@
         {
             "fallback": "Plain-text summary of the attachment.",
             "color": "<% if (success) { %>good<% } else { %>danger<%} %>",
-            "author_name": "nf-core/rnaseq v${version} - ${runName}",
+            "author_name": "nf-core/rnaseq ${version} - ${runName}",
             "author_icon": "https://www.nextflow.io/docs/latest/_static/favicon.ico",
             "text": "<% if (success) { %>Pipeline completed successfully!<% } else { %>Pipeline completed with errors<% } %>",
             "fields": [

modules.json

@@ -17,7 +17,7 @@
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
-                        "git_sha": "1b372269755a5c4a13c23bc130ebada8cb9d4cd0",
+                        "git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
                         "installed_by": ["modules"]
                     },
                     "custom/getchromsizes": {
@@ -67,7 +67,7 @@
                     },
                     "kallisto/index": {
                         "branch": "master",
-                        "git_sha": "bdbbd9a849f9dd2b6078b303d36bf26e6adb8a9e",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["modules"]
                     },
                     "kallisto/quant": {