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lines changed Original file line number Diff line number Diff line change @@ -11,13 +11,13 @@ report_section_order:
1111 fail_strand_check-module :
1212 order : 5001
1313 # Preprocessing and pre-alignment QC
14- fastqc_raw :
14+ fastqc :
1515 order : 4004
1616 cutadapt :
1717 order : 4003
1818 fastp :
1919 order : 4003
20- fastqc_trimmed :
20+ fastqc-1 :
2121 order : 4002
2222 # Alignment
2323 star :
@@ -99,15 +99,13 @@ run_modules:
9999module_order :
100100 - fastqc :
101101 name : " FastQC (raw)"
102- anchor : " fastqc_raw"
103102 info : " This section of the report shows FastQC results before adapter trimming."
104103 path_filters :
105104 - " *_raw*fastqc.zip"
106105 - cutadapt
107106 - fastp
108107 - fastqc :
109108 name : " FastQC (trimmed)"
110- anchor : " fastqc_trimmed"
111109 info : " This section of the report shows FastQC results after adapter trimming."
112110 path_filters :
113111 - " *_trimmed*fastqc.zip"
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