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Move channel operations outside of the onComplete() block
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  • subworkflows/local/utils_nfcore_rnaseq_pipeline

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subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -116,6 +116,8 @@ workflow PIPELINE_COMPLETION {
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id, status -> pass_strand_check[id] = status
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}
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def multiqc_report_list = multiqc_report.toList()
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//
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// Completion email and summary
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//
@@ -128,7 +130,7 @@ workflow PIPELINE_COMPLETION {
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plaintext_email,
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outdir,
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monochrome_logs,
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multiqc_report.toList()
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multiqc_report_list.getVal()
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)
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}
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