Skip to content

Commit 9f9c8b1

Browse files
pinin4fjordspinin4fjords
committed
[skip ci] update star_rsem pipeline snaps
1 parent 7568b2d commit 9f9c8b1

File tree

1 file changed

+42
-42
lines changed

1 file changed

+42
-42
lines changed

‎tests/star_rsem.nf.test.snap‎

Lines changed: 42 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -4,22 +4,22 @@
44
188,
55
{
66
"BBMAP_BBSPLIT": {
7-
"bbmap": 39.01
7+
"bbmap": 39.1
88
},
99
"BEDTOOLS_GENOMECOV_FW": {
1010
"bedtools": "2.31.1"
1111
},
1212
"CAT_FASTQ": {
13-
"cat": 8.3
13+
"cat": 9.5
1414
},
1515
"CUSTOM_CATADDITIONALFASTA": {
16-
"python": "3.9.5"
16+
"python": "3.12.2"
1717
},
1818
"CUSTOM_GETCHROMSIZES": {
19-
"getchromsizes": 1.2
19+
"getchromsizes": 1.21
2020
},
2121
"CUSTOM_TX2GENE": {
22-
"python": "3.9.5"
22+
"python": "3.10.4"
2323
},
2424
"DESEQ2_QC_PSEUDO": {
2525
"r-base": "4.0.3",
@@ -36,7 +36,7 @@
3636
"fastqc": "0.12.1"
3737
},
3838
"FQ_SUBSAMPLE": {
39-
"fq": "0.9.1 (2022-02-22)"
39+
"fq": "0.12.0 (2024-07-08)"
4040
},
4141
"GTF2BED": {
4242
"perl": "5.26.2"
@@ -88,35 +88,35 @@
8888
"rseqc": "5.0.2"
8989
},
9090
"SALMON_QUANT": {
91-
"salmon": "1.10.1"
91+
"salmon": "1.10.3"
9292
},
9393
"SAMTOOLS_FLAGSTAT": {
94-
"samtools": 1.2
94+
"samtools": 1.21
9595
},
9696
"SAMTOOLS_IDXSTATS": {
97-
"samtools": 1.2
97+
"samtools": 1.21
9898
},
9999
"SAMTOOLS_INDEX": {
100-
"samtools": 1.2
100+
"samtools": 1.21
101101
},
102102
"SAMTOOLS_SORT": {
103-
"samtools": 1.2
103+
"samtools": 1.21
104104
},
105105
"SAMTOOLS_STATS": {
106-
"samtools": 1.2
106+
"samtools": 1.21
107107
},
108108
"SE_GENE": {
109109
"bioconductor-summarizedexperiment": "1.32.0"
110110
},
111111
"STRINGTIE_STRINGTIE": {
112-
"stringtie": "2.2.1"
112+
"stringtie": "2.2.3"
113113
},
114114
"SUBREAD_FEATURECOUNTS": {
115-
"subread": "2.0.1"
115+
"subread": "2.0.6"
116116
},
117117
"TRIMGALORE": {
118-
"trimgalore": "0.6.7",
119-
"cutadapt": 3.4
118+
"trimgalore": "0.6.10",
119+
"cutadapt": 4.2
120120
},
121121
"TXIMETA_TXIMPORT": {
122122
"bioconductor-tximeta": "1.20.1"
@@ -125,7 +125,7 @@
125125
"ucsc": 377
126126
},
127127
"UCSC_BEDGRAPHTOBIGWIG": {
128-
"ucsc": 445
128+
"ucsc": 469
129129
},
130130
"UNTAR_RSEM_INDEX": {
131131
"untar": 1.34
@@ -1147,10 +1147,10 @@
11471147
"fastqc_trimmed_sequence_counts_plot.txt:md5,6ae4db60425cae4f78b13c798ad1dcf3",
11481148
"fastqc_trimmed_sequence_duplication_levels_plot.txt:md5,c73407d55fc532e864fa1dc8dbc12874",
11491149
"multiqc_citations.txt:md5,5a68f7972ea275b21b12acdf43447dfb",
1150-
"multiqc_cutadapt.txt:md5,aac9581a5670cb55edf564f3d6c1f9a7",
1150+
"multiqc_cutadapt.txt:md5,bc6ed9f59180b9346f22fb0f1e395dfa",
11511151
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
11521152
"multiqc_fastqc_fastqc_trimmed.txt:md5,26528b0b0d3df6304b80ca8f09619233",
1153-
"multiqc_featurecounts_biotype_plot.txt:md5,27bb37d346e8f0960c882a3676e219e8",
1153+
"multiqc_featurecounts_biotype_plot.txt:md5,aef45c9c7814f3127cd3e9b77a5ed676",
11541154
"multiqc_samtools_idxstats.txt:md5,1cbc64fc9713831a6f45effc0cfe6a39",
11551155
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
11561156
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
@@ -1166,31 +1166,31 @@
11661166
"expected_bias.gz:md5,3407f87245d0003e0ffbfdf6d8c04f20",
11671167
"observed_bias.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
11681168
"observed_bias_3p.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
1169-
"cmd_info.json:md5,1215f0c20f87d3aef8553ef119e1e74c",
1169+
"cmd_info.json:md5,138b27764a97d468418b3dac5e7f1cef",
11701170
"lib_format_counts.json:md5,c24ffe28d70476b5ccdd8bc2d22c0ac1",
11711171
"ambig_info.tsv:md5,45f252b4f0e11e6730cf0c29f800fdbb",
11721172
"expected_bias.gz:md5,3407f87245d0003e0ffbfdf6d8c04f20",
11731173
"observed_bias.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
11741174
"observed_bias_3p.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
1175-
"cmd_info.json:md5,621c6601aade5b1f2e3d6ca2fc71f636",
1175+
"cmd_info.json:md5,87bcf1e84fc31a794e3c8f8b227d11c3",
11761176
"lib_format_counts.json:md5,f6d44c0221f7fd559f11a9afe04c9935",
11771177
"ambig_info.tsv:md5,6dcc2891ea572e9b8d1ba52cd434ab84",
11781178
"expected_bias.gz:md5,3407f87245d0003e0ffbfdf6d8c04f20",
11791179
"observed_bias.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
11801180
"observed_bias_3p.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
1181-
"cmd_info.json:md5,9bed6e4dc5428d6f6297adcea29a6326",
1181+
"cmd_info.json:md5,ec504469f9b0e33c94f85846f1486d7f",
11821182
"lib_format_counts.json:md5,7c562bf2f70e42f3a7292687dfd328c3",
11831183
"ambig_info.tsv:md5,194f574e0586416155e3f33d42e2b167",
11841184
"expected_bias.gz:md5,3407f87245d0003e0ffbfdf6d8c04f20",
11851185
"observed_bias.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
11861186
"observed_bias_3p.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
1187-
"cmd_info.json:md5,c7ed0aaa5d6c7934ddbebfd29e4eb86d",
1187+
"cmd_info.json:md5,591436d401b6df6f3c6a8b16913158f4",
11881188
"lib_format_counts.json:md5,d46250bb3677d72feeefc435fe6395a6",
11891189
"ambig_info.tsv:md5,a26e3f936e65d7da66392603c2f91f6f",
11901190
"expected_bias.gz:md5,3407f87245d0003e0ffbfdf6d8c04f20",
11911191
"observed_bias.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
11921192
"observed_bias_3p.gz:md5,92bcd0592d22a6a58d0360fc76103e56",
1193-
"cmd_info.json:md5,69ebfc2c7ca6b221a0a22fa1dc8c20ac",
1193+
"cmd_info.json:md5,fe66c9d876645b9260d8c2488157d4d4",
11941194
"lib_format_counts.json:md5,088fd51db07022ffde47033bbd029400",
11951195
"R_sessionInfo.log:md5,fb0da0d7ad6994ed66a8e68348b19676",
11961196
"tx2gene.tsv:md5,0e2418a69d2eba45097ebffc2f700bfe",
@@ -1205,21 +1205,21 @@
12051205
"RAP1_UNINDUCED_REP2_intercept_slope.txt:md5,a1c5346e3bad40546c793b8914a22e7e",
12061206
"WT_REP1_intercept_slope.txt:md5,9c2e2b7890427e79c97e65827102d965",
12071207
"WT_REP2_intercept_slope.txt:md5,db7a36459f2036de6657e74d2c98a47c",
1208-
"RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv:md5,e66cd2b584d970ae3827ad2521f795ca",
1208+
"RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv:md5,5a7a4291e8ff6cc25a4eb72dfdf06b51",
12091209
"RAP1_IAA_30M_REP1.biotype_counts_rrna_mqc.tsv:md5,dde2de0cb90e10d0195c726f768e9941",
1210-
"RAP1_IAA_30M_REP1.featureCounts.txt:md5,b3013c797d2fd38a8efa39047f5ba1b1",
1210+
"RAP1_IAA_30M_REP1.featureCounts.txt:md5,a8200ec76e7916dc1210447130f77bbf",
12111211
"RAP1_UNINDUCED_REP1.biotype_counts_mqc.tsv:md5,548023e639f8eb76f973a2f98bcbc82c",
12121212
"RAP1_UNINDUCED_REP1.biotype_counts_rrna_mqc.tsv:md5,845ff9059c72bc6722a8de69776e22bb",
1213-
"RAP1_UNINDUCED_REP1.featureCounts.txt:md5,ff59317794fc04d5a4fd18797f0ecb0f",
1213+
"RAP1_UNINDUCED_REP1.featureCounts.txt:md5,577cd26ea14a25d5f667f05ef6d62816",
12141214
"RAP1_UNINDUCED_REP2.biotype_counts_mqc.tsv:md5,2c0b5696582493f7a50259679982a6b3",
12151215
"RAP1_UNINDUCED_REP2.biotype_counts_rrna_mqc.tsv:md5,6d3fa4c88c7fe61f638e4624ad5e22f0",
1216-
"RAP1_UNINDUCED_REP2.featureCounts.txt:md5,6ee84531ba255791a11b487b6aea75ab",
1217-
"WT_REP1.biotype_counts_mqc.tsv:md5,512645a8f736eee160c4465e1940f4a5",
1216+
"RAP1_UNINDUCED_REP2.featureCounts.txt:md5,e405c75b21f6e8113ca8e114e9ae1f20",
1217+
"WT_REP1.biotype_counts_mqc.tsv:md5,d083ca421266ae2d4b3cd745b41ae110",
12181218
"WT_REP1.biotype_counts_rrna_mqc.tsv:md5,8ef76d717492ca23764938aee8ea33a9",
1219-
"WT_REP1.featureCounts.txt:md5,289cc95971a3ec550e018659279c1f59",
1220-
"WT_REP2.biotype_counts_mqc.tsv:md5,d4957c0197636b68d27fbd60d388bba1",
1219+
"WT_REP1.featureCounts.txt:md5,32185355effd40ec8cdc1ee41dfd48ef",
1220+
"WT_REP2.biotype_counts_mqc.tsv:md5,c04c2936bbfac3bff284f96b7233b158",
12211221
"WT_REP2.biotype_counts_rrna_mqc.tsv:md5,12294618fe44df1e7f39348372dcb481",
1222-
"WT_REP2.featureCounts.txt:md5,152d2f26df56a88fe4b27c742d8f7447",
1222+
"WT_REP2.featureCounts.txt:md5,04c506ad79af5295666847fa729e691c",
12231223
"coverage_profile_along_genes_(high).txt:md5,31ab137e75752225365bd3d89143dbd2",
12241224
"coverage_profile_along_genes_(low).txt:md5,eaceda909bf652b8301fa0ed1bba9ae1",
12251225
"coverage_profile_along_genes_(total).txt:md5,eaceda909bf652b8301fa0ed1bba9ae1",
@@ -1268,25 +1268,25 @@
12681268
],
12691269
"meta": {
12701270
"nf-test": "0.9.0",
1271-
"nextflow": "24.09.0"
1271+
"nextflow": "24.04.4"
12721272
},
1273-
"timestamp": "2024-10-10T12:45:00.993602"
1273+
"timestamp": "2024-10-21T16:29:54.475156285"
12741274
},
12751275
"Params: --aligner star_rsem - stub": {
12761276
"content": [
12771277
22,
12781278
{
12791279
"BBMAP_BBSPLIT": {
1280-
"bbmap": 39.01
1280+
"bbmap": 39.1
12811281
},
12821282
"CAT_FASTQ": {
1283-
"cat": 8.3
1283+
"cat": 9.5
12841284
},
12851285
"CUSTOM_CATADDITIONALFASTA": {
12861286
"python": null
12871287
},
12881288
"CUSTOM_GETCHROMSIZES": {
1289-
"getchromsizes": 1.2
1289+
"getchromsizes": 1.21
12901290
},
12911291
"FASTQC": {
12921292
"fastqc": "0.12.1"
@@ -1304,8 +1304,8 @@
13041304
"gunzip": 1.1
13051305
},
13061306
"TRIMGALORE": {
1307-
"trimgalore": "0.6.7",
1308-
"cutadapt": 3.4
1307+
"trimgalore": "0.6.10",
1308+
"cutadapt": 4.2
13091309
},
13101310
"UNTAR_RSEM_INDEX": {
13111311
"untar": 1.34
@@ -1359,8 +1359,8 @@
13591359
],
13601360
"meta": {
13611361
"nf-test": "0.9.0",
1362-
"nextflow": "24.09.0"
1362+
"nextflow": "24.04.4"
13631363
},
1364-
"timestamp": "2024-10-10T11:41:09.240442"
1364+
"timestamp": "2024-10-21T16:31:04.240180676"
13651365
}
1366-
}
1366+
}

0 commit comments

Comments
 (0)