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update skip_trimming snaps
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‎tests/skip_trimming.nf.test.snap‎

Lines changed: 36 additions & 36 deletions
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@@ -4,22 +4,22 @@
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{
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"BBMAP_BBSPLIT": {
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"bbmap": 39.01
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"bbmap": 39.1
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},
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"BEDTOOLS_GENOMECOV_FW": {
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"bedtools": "2.31.1"
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},
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"CAT_FASTQ": {
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"cat": 8.3
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"cat": 9.5
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},
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"CUSTOM_CATADDITIONALFASTA": {
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"python": "3.9.5"
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"python": "3.12.2"
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},
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"CUSTOM_GETCHROMSIZES": {
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"getchromsizes": 1.21
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},
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"CUSTOM_TX2GENE": {
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"python": "3.9.5"
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"python": "3.10.4"
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},
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"DESEQ2_QC_PSEUDO": {
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"r-base": "4.0.3",
@@ -36,7 +36,7 @@
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"fastqc": "0.12.1"
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},
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"FQ_SUBSAMPLE": {
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"fq": "0.9.1 (2022-02-22)"
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"fq": "0.12.0 (2024-07-08)"
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},
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"GTF2BED": {
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"perl": "5.26.2"
@@ -81,22 +81,22 @@
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"rseqc": "5.0.2"
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},
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"SALMON_QUANT": {
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"SAMTOOLS_FLAGSTAT": {
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"samtools": 1.21
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},
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"SAMTOOLS_IDXSTATS": {
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"samtools": 1.21
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"SAMTOOLS_INDEX": {
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"SAMTOOLS_SORT": {
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},
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"SE_GENE": {
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"bioconductor-summarizedexperiment": "1.32.0"
@@ -112,10 +112,10 @@
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"gawk": "5.1.0"
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},
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"STRINGTIE_STRINGTIE": {
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"stringtie": "2.2.3"
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},
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"SUBREAD_FEATURECOUNTS": {
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"ucsc": 377
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"UCSC_BEDGRAPHTOBIGWIG": {
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"ucsc": 469
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},
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"UNTAR_SALMON_INDEX": {
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"untar": 1.34
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"RAP1_UNINDUCED_REP1_dupMatrix.txt:md5,aa94a148bdbebec4e82cd18a00316506",
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"RAP1_UNINDUCED_REP2.featureCounts.txt:md5,6fed16d5ab57aa762891fde0c3720160",
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"WT_REP1.biotype_counts_mqc.tsv:md5,ddcf909eacd91a49cc4fd3beed0b74f4",
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"RAP1_UNINDUCED_REP2.featureCounts.txt:md5,392538c1d377a72f6d89e5ace7e69bcd",
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"WT_REP1.biotype_counts_mqc.tsv:md5,159e8125673fd75086d352ca1359d7b7",
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"WT_REP1.biotype_counts_rrna_mqc.tsv:md5,8ef76d717492ca23764938aee8ea33a9",
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"WT_REP2.biotype_counts_rrna_mqc.tsv:md5,12294618fe44df1e7f39348372dcb481",
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"RAP1_IAA_30M_REP1.SJ.out.tab:md5,20c790387ef68e041bc4ffdcd032a22f",
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"RAP1_UNINDUCED_REP2.SJ.out.tab:md5,1c0458f66e4af56a56f4409c120434b3",
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.09.0"
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"nextflow": "24.04.4"
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},
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"timestamp": "2024-10-10T11:28:37.351353"
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"timestamp": "2024-10-21T16:42:37.90820776"
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}
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}

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