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Revert "Correct for new featurecounts summary ext"
This reverts commit 314a739.
1 parent 314a739 commit b36560e

13 files changed

+88
-12
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‎tests/.nftignore‎

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@@ -22,7 +22,7 @@ umitools/*.umi_extract.log
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{hisat2,star_rsem,star_salmon}/dupradar/histogram/*_expressionHist.pdf
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{hisat2,star_rsem,star_salmon}/dupradar/scatter_plot/*_duprateExpDens.pdf
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{hisat2,star_rsem,star_salmon}/dupradar/intercepts_slope/*_intercept_slope.txt
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{hisat2,star_rsem,star_salmon}/featurecounts/*.featureCounts.{txt,tsv}.summary
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{hisat2,star_rsem,star_salmon}/featurecounts/*.featureCounts.txt.summary
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{hisat2,star_rsem,star_salmon}/picard_metrics/*.MarkDuplicates.metrics.txt
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{hisat2,star_rsem,star_salmon}/qualimap/*/css/*
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{hisat2,star_rsem,star_salmon}/qualimap/*/images_qualimapReport/*

‎tests/default.nf.test.snap‎

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"RAP1_UNINDUCED_REP2.featureCounts.tsv.summary:md5,1c69f066c7457c2633f4f90f322744fc",
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"WT_REP2.featureCounts.tsv.summary:md5,9924ccf94b6feeabb0ad88e56febfd2e",
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},
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"timestamp": "2025-06-04T11:15:07.425006953"
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}
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}
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}

‎tests/featurecounts_group_type.nf.test.snap‎

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},
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"timestamp": "2025-06-03T19:32:53.288039672"
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}
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}
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}

‎tests/hisat2.nf.test.snap‎

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"hisat2/featurecounts/RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.biotype_counts_rrna_mqc.tsv",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.featureCounts.tsv.summary",
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"hisat2/featurecounts/RAP1_UNINDUCED_REP2.featureCounts.tsv.summary",
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"hisat2/log/RAP1_UNINDUCED_REP1.hisat2.summary.log",
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"RAP1_UNINDUCED_REP2.featureCounts.tsv.summary:md5,c8967f02a4598b23d5f56eaed2a35932",
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"WT_REP2.featureCounts.tsv.summary:md5,8c9a3099292bc7545136c868a4ade730",
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"coverage_profile_along_genes_(high).txt:md5,b56043c3546cac003461c57abad93536",
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"coverage_profile_along_genes_(low).txt:md5,1b55d86defcc541643137497c4c6bb06",
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"coverage_profile_along_genes_(total).txt:md5,1b55d86defcc541643137497c4c6bb06",
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},
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"timestamp": "2025-06-04T11:42:03.435738205"
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}
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}
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}

‎tests/kallisto.nf.test.snap‎

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},
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"timestamp": "2025-01-28T13:50:34.753130451"
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}
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}
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}

‎tests/min_mapped_reads.nf.test.snap‎

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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv",
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},
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"timestamp": "2025-01-28T13:58:55.550749008"
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}
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}
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}

‎tests/nofasta.nf.test.snap‎

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}
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}
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}

‎tests/remove_ribo_rna.nf.test.snap‎

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"RAP1_UNINDUCED_REP2.featureCounts.tsv.summary:md5,7b389e1f707eb19947f8bbe5f179b4e7",
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"WT_REP1.biotype_counts_mqc.tsv:md5,97caee79e83b5fce6e5504c0daefe474",
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"WT_REP1.biotype_counts_rrna_mqc.tsv:md5,8ef76d717492ca23764938aee8ea33a9",
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"WT_REP1.featureCounts.tsv:md5,2aa40a90f397b5efd8409b8df8f3d520",
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"WT_REP1.featureCounts.tsv.summary:md5,0637bb863fb48bc5e0dc97ecc3df6c98",
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"WT_REP2.biotype_counts_mqc.tsv:md5,e6bec82076f4cb2eff39f0d1bae70dc9",
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"WT_REP2.biotype_counts_rrna_mqc.tsv:md5,12294618fe44df1e7f39348372dcb481",
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"WT_REP2.featureCounts.tsv:md5,120171de51a8697aee507a6acb424191",
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"WT_REP2.featureCounts.tsv.summary:md5,65b74659f4873701cd2ed5d8679785a5",
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"RAP1_IAA_30M_REP1.SJ.out.tab:md5,ea95e243278af55534f2c52eb5fff7ee",
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"RAP1_UNINDUCED_REP1.SJ.out.tab:md5,e548d13942535dc0821f3ec6d9743ec8",
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"RAP1_UNINDUCED_REP2.SJ.out.tab:md5,1f294365343a1a5e95682792fdb77033",
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},
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"timestamp": "2025-06-03T13:10:09.375619385"
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}
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}
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}

‎tests/salmon.nf.test.snap‎

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},
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"timestamp": "2025-01-28T14:19:20.666237815"
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}
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}

‎tests/skip_qc.nf.test.snap‎

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"timestamp": "2025-06-03T18:32:24.98419919"
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}
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}
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}

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