Bump software versions for local modules

Author: drpatelh

modules/local/dupradar.nf

@@ -2,10 +2,10 @@ process DUPRADAR {
     tag "$meta.id"
     label 'process_long'
 
-    conda "bioconda::bioconductor-dupradar=1.18.0"
+    conda "bioconda::bioconductor-dupradar=1.28.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-dupradar:1.18.0--r40_1' :
-        'quay.io/biocontainers/bioconductor-dupradar:1.18.0--r40_1' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-dupradar:1.28.0--r42hdfd78af_0' :
+        'quay.io/biocontainers/bioconductor-dupradar:1.28.0--r42hdfd78af_0' }"
 
     input:
     tuple val(meta), path(bam)

modules/local/salmon_summarizedexperiment.nf

@@ -2,10 +2,10 @@ process SALMON_SUMMARIZEDEXPERIMENT {
     tag "$tx2gene"
     label "process_medium"
 
-    conda "bioconda::bioconductor-summarizedexperiment=1.20.0"
+    conda "bioconda::bioconductor-summarizedexperiment=1.24.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-summarizedexperiment:1.20.0--r40_0' :
-        'quay.io/biocontainers/bioconductor-summarizedexperiment:1.20.0--r40_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-summarizedexperiment:1.24.0--r41hdfd78af_0' :
+        'quay.io/biocontainers/bioconductor-summarizedexperiment:1.24.0--r41hdfd78af_0' }"
 
     input:
     path counts

modules/local/salmon_tximport.nf

@@ -1,10 +1,10 @@
 process SALMON_TXIMPORT {
     label "process_medium"
 
-    conda "bioconda::bioconductor-tximeta=1.8.0"
+    conda "bioconda::bioconductor-tximeta=1.12.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bioconductor-tximeta:1.8.0--r40_0' :
-        'quay.io/biocontainers/bioconductor-tximeta:1.8.0--r40_0' }"
+        'https://depot.galaxyproject.org/singularity/bioconductor-tximeta:1.12.0--r41hdfd78af_0' :
+        'quay.io/biocontainers/bioconductor-tximeta:1.12.0--r41hdfd78af_0' }"
 
     input:
     path ("salmon/*")