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@@ -14,23 +14,25 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
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-[PR #1351](https://github.com/nf-core/rnaseq/pull/1351) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
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### Parameters
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| Old parameter | New parameter |
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| ------------------ |`--contaminant_screening`|
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||`--kraken_db`|
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||`--save_kraken_assignments`|
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||`--save_kraken_unassigned`|
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||`--bracken_precision`|
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| Old parameter | New parameter |
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| ------------- | --------------------------- |
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||`--contaminant_screening`|
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||`--kraken_db`|
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||`--save_kraken_assignments`|
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||`--save_kraken_unassigned`|
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||`--bracken_precision`|
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> **NB:** Parameter has been **updated** if both old and new parameter information is present.
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> **NB:** Parameter has been **added** if just the new parameter information is present.
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> **NB:** Parameter has been **removed** if new parameter information isn't present.
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### Software dependencies
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| Dependency | Old version | New version |
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| --------------| ----------- | ----------- |
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|`Kraken2`| ----------- | 2.1.3 |
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|`Bracken`| ----------- | 2.9 |
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| Dependency | Old version | New version |
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| ---------- | ----------- | ----------- |
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|`Kraken2`| ----------- | 2.1.3 |
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|`Bracken`| ----------- | 2.9 |
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> **NB:** Dependency has been **updated** if both old and new version information is present.
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