Merge pull request #1122 from nf-core/dev

Dev -> master for 3.13.1 release

Author: pinin4fjords

CHANGELOG.md

@@ -3,6 +3,12 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[3.13.1](https://github.com/nf-core/rnaseq/releases/tag/3.13.1)] - 2023-11-17
+
+### Enhancements and fixes
+
+- [[PR #1121](https://github.com/nf-core/rnaseq/pull/1121) - Changes for 3.13.1 patch release incl. igenomes star fix
+
 ## [[3.13.0](https://github.com/nf-core/rnaseq/releases/tag/3.13.0)] - 2023-11-17
 
 ### Credits

modules/local/star_align_igenomes/main.nf

@@ -9,8 +9,8 @@ process STAR_ALIGN_IGENOMES {
 
     input:
     tuple val(meta), path(reads)
-    path index
-    path gtf
+    tuple val(meta2), path(index)
+    tuple val(meta3), path(gtf)
     val star_ignore_sjdbgtf
     val seq_platform
     val seq_center

nextflow.config

@@ -317,7 +317,7 @@ manifest {
     description     = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '3.13.0'
+    version         = '3.13.1'
     doi             = 'https://doi.org/10.5281/zenodo.1400710'
 }