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pinin4fjordspinin4fjords
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Bump gunzip in snaps
1 parent 2199a33 commit b73cefc

12 files changed

+45
-45
lines changed

‎tests/default.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
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@@ -28,10 +28,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
31-
"gunzip": 1.1
31+
"gunzip": 1.13
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},
3333
"GUNZIP_GTF": {
34-
"gunzip": 1.1
34+
"gunzip": 1.13
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},
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"STAR_GENOMEGENERATE": {
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"star": "2.7.11b",
@@ -152,10 +152,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
155-
"gunzip": 1.1
155+
"gunzip": 1.13
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},
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"GUNZIP_GTF": {
158-
"gunzip": 1.1
158+
"gunzip": 1.13
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},
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"MULTIQC_CUSTOM_BIOTYPE": {
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"python": "3.9.5"

‎tests/featurecounts_group_type.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -28,10 +28,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
31-
"gunzip": 1.1
31+
"gunzip": 1.13
3232
},
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"GUNZIP_GTF": {
34-
"gunzip": 1.1
34+
"gunzip": 1.13
3535
},
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"STAR_GENOMEGENERATE": {
3737
"star": "2.7.11b",
@@ -152,10 +152,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
155-
"gunzip": 1.1
155+
"gunzip": 1.13
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},
157157
"GUNZIP_GTF": {
158-
"gunzip": 1.1
158+
"gunzip": 1.13
159159
},
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"PICARD_MARKDUPLICATES": {
161161
"picard": "3.1.1"

‎tests/hisat2.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -28,10 +28,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
31-
"gunzip": 1.1
31+
"gunzip": 1.13
3232
},
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"GUNZIP_GTF": {
34-
"gunzip": 1.1
34+
"gunzip": 1.13
3535
},
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"HISAT2_EXTRACTSPLICESITES": {
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"hisat2": "2.2.1"
@@ -149,10 +149,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
152-
"gunzip": 1.1
152+
"gunzip": 1.13
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},
154154
"GUNZIP_GTF": {
155-
"gunzip": 1.1
155+
"gunzip": 1.13
156156
},
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"HISAT2_ALIGN": {
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"hisat2": "2.2.1",

‎tests/kallisto.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -31,10 +31,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
34-
"gunzip": 1.1
34+
"gunzip": 1.13
3535
},
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"GUNZIP_GTF": {
37-
"gunzip": 1.1
37+
"gunzip": 1.13
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},
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"KALLISTO_INDEX": {
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"kallisto": "0.51.1"
@@ -303,10 +303,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
306-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"GUNZIP_GTF": {
309-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"KALLISTO_INDEX": {
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"kallisto": "0.51.1"

‎tests/min_mapped_reads.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -48,10 +48,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
51-
"gunzip": 1.1
51+
"gunzip": 1.13
5252
},
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"GUNZIP_GTF": {
54-
"gunzip": 1.1
54+
"gunzip": 1.13
5555
},
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"MULTIQC_CUSTOM_BIOTYPE": {
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"python": "3.9.5"
@@ -1222,10 +1222,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
1225-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"GUNZIP_GTF": {
1228-
"gunzip": 1.1
1228+
"gunzip": 1.13
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},
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"STAR_GENOMEGENERATE": {
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"star": "2.7.11b",

‎tests/nofasta.nf.test.snap‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -29,7 +29,7 @@
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"python": "3.9.5"
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},
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"GUNZIP_GTF": {
32-
"gunzip": 1.1
32+
"gunzip": 1.13
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},
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"SALMON_INDEX": {
3535
"salmon": "1.10.3"

‎tests/remove_ribo_rna.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -48,10 +48,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
51-
"gunzip": 1.1
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"gunzip": 1.13
5252
},
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"GUNZIP_GTF": {
54-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"MULTIQC_CUSTOM_BIOTYPE": {
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"python": "3.9.5"
@@ -1431,10 +1431,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
1434-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"GUNZIP_GTF": {
1437-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"SORTMERNA_INDEX": {
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"sortmerna": "4.3.7"

‎tests/salmon.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -31,10 +31,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
34-
"gunzip": 1.1
34+
"gunzip": 1.13
3535
},
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"GUNZIP_GTF": {
37-
"gunzip": 1.1
37+
"gunzip": 1.13
3838
},
3939
"SALMON_QUANT": {
4040
"salmon": "1.10.3"
@@ -379,10 +379,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
382-
"gunzip": 1.1
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"gunzip": 1.13
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},
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"GUNZIP_GTF": {
385-
"gunzip": 1.1
385+
"gunzip": 1.13
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},
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"TRIMGALORE": {
388388
"trimgalore": "0.6.10",

‎tests/skip_qc.nf.test.snap‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -25,10 +25,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
28-
"gunzip": 1.1
28+
"gunzip": 1.13
2929
},
3030
"GUNZIP_GTF": {
31-
"gunzip": 1.1
31+
"gunzip": 1.13
3232
},
3333
"STAR_GENOMEGENERATE": {
3434
"star": "2.7.11b",
@@ -124,10 +124,10 @@
124124
"python": "3.9.5"
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},
126126
"GUNZIP_ADDITIONAL_FASTA": {
127-
"gunzip": 1.1
127+
"gunzip": 1.13
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},
129129
"GUNZIP_GTF": {
130-
"gunzip": 1.1
130+
"gunzip": 1.13
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},
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"PICARD_MARKDUPLICATES": {
133133
"picard": "3.1.1"

‎tests/skip_trimming.nf.test.snap‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -48,10 +48,10 @@
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"python": "3.9.5"
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},
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"GUNZIP_ADDITIONAL_FASTA": {
51-
"gunzip": 1.1
51+
"gunzip": 1.13
5252
},
5353
"GUNZIP_GTF": {
54-
"gunzip": 1.1
54+
"gunzip": 1.13
5555
},
5656
"MULTIQC_CUSTOM_BIOTYPE": {
5757
"python": "3.9.5"

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