Bump versions after release

pinin4fjords · pinin4fjords · commit b89be0185d92 · 2024-12-20T17:24:11.000Z
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,12 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+# 3.19.0dev - xxxx-xx-xx
+
+### Credits
+
+### Enhancements & fixes
+
 # 3.18.0 - 2024-12-19
 
 ### Credits
diff --git a/nextflow.config b/nextflow.config
@@ -333,7 +333,7 @@ manifest {
     description     = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.04.2'
-    version         = '3.18.0'
+    version         = '3.19.0dev'
     doi             = 'https://doi.org/10.5281/zenodo.1400710'
 }
 
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -46,7 +46,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -240,7 +240,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -46,7 +46,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -234,7 +234,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -47,7 +47,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -237,7 +237,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -59,7 +59,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -319,7 +319,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -137,7 +137,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -1246,7 +1246,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -143,7 +143,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -1460,7 +1460,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -53,7 +53,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -392,7 +392,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -43,7 +43,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -182,7 +182,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
@@ -133,7 +133,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -137,7 +137,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -1339,7 +1339,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap
@@ -140,7 +140,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -1644,7 +1644,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
@@ -2797,7 +2797,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.18.0"
+                    "nf-core/rnaseq": "v3.19.0dev"
                 }
             },
             [
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/rnaseq/releases/tag/3.18.0"
+  This report has been generated by the <a href="https://github.com/nf-core/rnaseq/tree/dev"
   target="_blank">nf-core/rnaseq</a> analysis pipeline. For information about how
-  to interpret these results, please see the <a href="https://nf-co.re/rnaseq/3.18.0/docs/output"
+  to interpret these results, please see the <a href="https://nf-co.re/rnaseq/dev/docs/output"
   target="_blank">documentation</a>.
 report_section_order:
   # Important checks and failures

Original file line number	Diff line number	Diff line change
`@@ -333,7 +333,7 @@ manifest {`
`333`	`333`	`description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""`
`334`	`334`	`mainScript = 'main.nf'`
`335`	`335`	`nextflowVersion = '!>=24.04.2'`
`336`		`- version = '3.18.0'`
	`336`	`+ version = '3.19.0dev'`
`337`	`337`	`doi = 'https://doi.org/10.5281/zenodo.1400710'`
`338`	`338`	`}`
`339`	`339`
Original file line number	Diff line number	Diff line change
`@@ -46,7 +46,7 @@`
`46`	`46`	`"untar": 1.34`
`47`	`47`	`},`
`48`	`48`	`"Workflow": {`
`49`		`- "nf-core/rnaseq": "v3.18.0"`
	`49`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`50`	`50`	`}`
`51`	`51`	`},`
`52`	`52`	`[`
`@@ -240,7 +240,7 @@`
`240`	`240`	`"untar": 1.34`
`241`	`241`	`},`
`242`	`242`	`"Workflow": {`
`243`		`- "nf-core/rnaseq": "v3.18.0"`
	`243`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`244`	`244`	`}`
`245`	`245`	`},`
`246`	`246`	`[`
Original file line number	Diff line number	Diff line change
`@@ -47,7 +47,7 @@`
`47`	`47`	`"untar": 1.34`
`48`	`48`	`},`
`49`	`49`	`"Workflow": {`
`50`		`- "nf-core/rnaseq": "v3.18.0"`
	`50`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`51`	`51`	`}`
`52`	`52`	`},`
`53`	`53`	`[`
`@@ -237,7 +237,7 @@`
`237`	`237`	`"untar": 1.34`
`238`	`238`	`},`
`239`	`239`	`"Workflow": {`
`240`		`- "nf-core/rnaseq": "v3.18.0"`
	`240`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`241`	`241`	`}`
`242`	`242`	`},`
`243`	`243`	`[`
Original file line number	Diff line number	Diff line change
`@@ -59,7 +59,7 @@`
`59`	`59`	`"untar": 1.34`
`60`	`60`	`},`
`61`	`61`	`"Workflow": {`
`62`		`- "nf-core/rnaseq": "v3.18.0"`
	`62`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`63`	`63`	`}`
`64`	`64`	`},`
`65`	`65`	`[`
`@@ -319,7 +319,7 @@`
`319`	`319`	`"untar": 1.34`
`320`	`320`	`},`
`321`	`321`	`"Workflow": {`
`322`		`- "nf-core/rnaseq": "v3.18.0"`
	`322`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`323`	`323`	`}`
`324`	`324`	`},`
`325`	`325`	`[`
Original file line number	Diff line number	Diff line change
`@@ -137,7 +137,7 @@`
`137`	`137`	`"untar": 1.34`
`138`	`138`	`},`
`139`	`139`	`"Workflow": {`
`140`		`- "nf-core/rnaseq": "v3.18.0"`
	`140`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`141`	`141`	`}`
`142`	`142`	`},`
`143`	`143`	`[`
`@@ -1246,7 +1246,7 @@`
`1246`	`1246`	`"untar": 1.34`
`1247`	`1247`	`},`
`1248`	`1248`	`"Workflow": {`
`1249`		`- "nf-core/rnaseq": "v3.18.0"`
	`1249`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`1250`	`1250`	`}`
`1251`	`1251`	`},`
`1252`	`1252`	`[`
Original file line number	Diff line number	Diff line change
`@@ -143,7 +143,7 @@`
`143`	`143`	`"untar": 1.34`
`144`	`144`	`},`
`145`	`145`	`"Workflow": {`
`146`		`- "nf-core/rnaseq": "v3.18.0"`
	`146`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`147`	`147`	`}`
`148`	`148`	`},`
`149`	`149`	`[`
`@@ -1460,7 +1460,7 @@`
`1460`	`1460`	`"untar": 1.34`
`1461`	`1461`	`},`
`1462`	`1462`	`"Workflow": {`
`1463`		`- "nf-core/rnaseq": "v3.18.0"`
	`1463`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`1464`	`1464`	`}`
`1465`	`1465`	`},`
`1466`	`1466`	`[`
Original file line number	Diff line number	Diff line change
`@@ -53,7 +53,7 @@`
`53`	`53`	`"untar": 1.34`
`54`	`54`	`},`
`55`	`55`	`"Workflow": {`
`56`		`- "nf-core/rnaseq": "v3.18.0"`
	`56`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`57`	`57`	`}`
`58`	`58`	`},`
`59`	`59`	`[`
`@@ -392,7 +392,7 @@`
`392`	`392`	`"untar": 1.34`
`393`	`393`	`},`
`394`	`394`	`"Workflow": {`
`395`		`- "nf-core/rnaseq": "v3.18.0"`
	`395`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`396`	`396`	`}`
`397`	`397`	`},`
`398`	`398`	`[`
Original file line number	Diff line number	Diff line change
`@@ -43,7 +43,7 @@`
`43`	`43`	`"untar": 1.34`
`44`	`44`	`},`
`45`	`45`	`"Workflow": {`
`46`		`- "nf-core/rnaseq": "v3.18.0"`
	`46`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`47`	`47`	`}`
`48`	`48`	`},`
`49`	`49`	`[`
`@@ -182,7 +182,7 @@`
`182`	`182`	`"untar": 1.34`
`183`	`183`	`},`
`184`	`184`	`"Workflow": {`
`185`		`- "nf-core/rnaseq": "v3.18.0"`
	`185`	`+ "nf-core/rnaseq": "v3.19.0dev"`
`186`	`186`	`}`
`187`	`187`	`},`
`188`	`188`	`[`