actually swap the files

Author: maxulysse

conf/test.config

@@ -21,20 +21,19 @@ params {
 
 
     // Input data
-    // params.test_data_base (default) = 'https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/'
-    input = "${params.test_data_base}/samplesheet/v3.10/samplesheet_test.csv"
+    input = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/samplesheet/v3.10/samplesheet_test.csv"
 
     // Genome references
-    fasta              = "${params.test_data_base}/reference/genome.fasta"
-    gtf                = "${params.test_data_base}/reference/genes.gtf.gz"
-    gff                = "${params.test_data_base}/reference/genes.gff.gz"
-    transcript_fasta   = "${params.test_data_base}/reference/transcriptome.fasta"
-    additional_fasta   = "${params.test_data_base}/reference/gfp.fa.gz"
-
-    bbsplit_fasta_list = "${params.test_data_base}/reference/bbsplit_fasta_list.txt"
-    hisat2_index       = "${params.test_data_base}/reference/hisat2.tar.gz"
-    salmon_index       = "${params.test_data_base}/reference/salmon.tar.gz"
-    rsem_index         = "${params.test_data_base}/reference/rsem.tar.gz"
+    fasta              = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genome.fasta"
+    gtf                = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gtf.gz"
+    gff                = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gff.gz"
+    transcript_fasta   = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/transcriptome.fasta"
+    additional_fasta   = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/gfp.fa.gz"
+
+    bbsplit_fasta_list = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/bbsplit_fasta_list.txt"
+    hisat2_index       = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/hisat2.tar.gz"
+    salmon_index       = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/salmon.tar.gz"
+    rsem_index         = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz"
 
     // Other parameters
     skip_bbsplit        = false

conf/test_cache.config

@@ -21,19 +21,20 @@ params {
 
 
     // Input data
-    input = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/samplesheet/v3.10/samplesheet_test.csv"
+    // params.test_data_base (default) = 'https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/'
+    input = "${params.test_data_base}/samplesheet/v3.10/samplesheet_test.csv"
 
     // Genome references
-    fasta              = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genome.fasta"
-    gtf                = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gtf.gz"
-    gff                = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/genes.gff.gz"
-    transcript_fasta   = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/transcriptome.fasta"
-    additional_fasta   = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/gfp.fa.gz"
-
-    bbsplit_fasta_list = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/bbsplit_fasta_list.txt"
-    hisat2_index       = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/hisat2.tar.gz"
-    salmon_index       = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/salmon.tar.gz"
-    rsem_index         = "https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz"
+    fasta              = "${params.test_data_base}/reference/genome.fasta"
+    gtf                = "${params.test_data_base}/reference/genes.gtf.gz"
+    gff                = "${params.test_data_base}/reference/genes.gff.gz"
+    transcript_fasta   = "${params.test_data_base}/reference/transcriptome.fasta"
+    additional_fasta   = "${params.test_data_base}/reference/gfp.fa.gz"
+
+    bbsplit_fasta_list = "${params.test_data_base}/reference/bbsplit_fasta_list.txt"
+    hisat2_index       = "${params.test_data_base}/reference/hisat2.tar.gz"
+    salmon_index       = "${params.test_data_base}/reference/salmon.tar.gz"
+    rsem_index         = "${params.test_data_base}/reference/rsem.tar.gz"
 
     // Other parameters
     skip_bbsplit        = false