exit code for unrecoverable snapshots errors

When a process is being snapshotted via Fusion Snapshots
and encounters an unrecoverable error the Fusion Snapshots runtime emits
a specific exit code (175) to signal that to Nextflow.

This PR makes sure that users running RNASeq
are including the exit code in their retry strategy.

Author: fntlnz

CHANGELOG.md

@@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [PR #1528](https://github.com/nf-core/rnaseq/pull/1528) - Improve JSON schema validation files
 - [PR #1523](https://github.com/nf-core/rnaseq/pull/1523) - Update preprocessing subworkflow to fix linting block on trimming
 - [PR #1521](https://github.com/nf-core/rnaseq/pull/1521) - Updated Perl conda package version for local module gtf2bed for Arm compatibility.
+- [PR #1553](https://github.com/nf-core/rnaseq/pull/1553) - Make jobs automatically resubmit for exit code 175
 
 # 3.18.0 - 2024-12-19
 

conf/base.config

@@ -15,7 +15,7 @@ process {
     memory = { 6.GB   * task.attempt }
     time   = { 4.h    * task.attempt }
 
-    errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
+    errorStrategy = { task.exitStatus in ((130..145) + 104 + 175) ? 'retry' : 'finish' }
     maxRetries    = 1
     maxErrors     = '-1'