Fix config error

pinin4fjords · pinin4fjords · commit cdfb98b9dcb1 · 2024-10-22T19:50:23.000Z
diff --git a/subworkflows/local/align_star/nextflow.config b/subworkflows/local/align_star/nextflow.config
@@ -36,11 +36,10 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeSAMoutput BanSingleEnd')
             }
         }
-        withName: 'ALIGN_STAR:STAR_ALIGN_IGENOMES' {
+        withName: '.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {
             ext.args   = {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeBan Singleend')
             }
-        
         }
         withName: '.*:ALIGN_STAR:STAR_ALIGN|.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {
 

Original file line number	Diff line number	Diff line change
`@@ -36,11 +36,10 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {`
`36`	`36`	`generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeSAMoutput BanSingleEnd')`
`37`	`37`	`}`
`38`	`38`	`}`
`39`		`- withName: 'ALIGN_STAR:STAR_ALIGN_IGENOMES' {`
	`39`	`+ withName: '.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {`
`40`	`40`	`ext.args = {`
`41`	`41`	`generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeBan Singleend')`
`42`	`42`	`}`
`43`		`-`
`44`	`43`	`}`
`45`	`44`	`withName: '.:ALIGN_STAR:STAR_ALIGN\|.:ALIGN_STAR:STAR_ALIGN_IGENOMES' {`
`46`	`45`