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Update other CI tests
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.github/workflows/ci.yml

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@@ -20,7 +20,7 @@ jobs:
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name: Run pipeline with test data
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# Only run on push if this is the nf-core dev branch (merged PRs)
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if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}"
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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NXF_VER:
@@ -66,7 +66,7 @@ jobs:
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star_salmon:
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name: Test STAR Salmon with workflow parameters
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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parameters:
@@ -123,7 +123,7 @@ jobs:
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star_rsem:
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name: Test STAR RSEM with workflow parameters
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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parameters:
@@ -169,7 +169,7 @@ jobs:
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hisat2:
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name: Test HISAT2 with workflow parameters
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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parameters:
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salmon:
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name: Test Salmon with workflow parameters
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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parameters:

.github/workflows/cloud_tests_full.yml

Lines changed: 3 additions & 3 deletions
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@@ -16,7 +16,7 @@ on:
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jobs:
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run-full-tests-on-aws:
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if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'aws' }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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aligner: ["star_salmon", "star_rsem"]
@@ -41,7 +41,7 @@ jobs:
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path: tower_action_*.log
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run-full-tests-on-gcp:
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if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'gcp' }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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aligner: ["star_salmon", "star_rsem"]
@@ -66,7 +66,7 @@ jobs:
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path: tower_action_*.log
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run-full-tests-on-azure:
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if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'azure' }}
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runs-on: self-hosted
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runs-on: ubuntu-latest
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strategy:
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matrix:
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aligner: ["star_salmon", "star_rsem"]

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