Fix #1011

Author: drpatelh

CHANGELOG.md

@@ -7,13 +7,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
+- [[#1011](https://github.com/nf-core/rnaseq/issues/1011)] - FastQ files from UMI-tools not being passed to fastp
 - [PR #1016](https://github.com/nf-core/rnaseq/pull/1016) - Updated pipeline template to [nf-core/tools 2.8](https://github.com/nf-core/tools/releases/tag/2.8)
 - [PR #1025](https://github.com/nf-core/fetchngs/pull/1025) - Add `public_aws_ecr.config` to source mulled containers when using `public.ecr.aws` Docker Biocontainer registry
 
 ### Software dependencies
 
 | Dependency | Old version | New version |
 | ---------- | ----------- | ----------- |
+| `fastp`    | 0.23.2      | 0.23.3      |
 | `samtools` | 1.16.1      | 1.17        |
 
 > **NB:** Dependency has been **updated** if both old and new version information is present.

modules.json

@@ -27,7 +27,7 @@
                     },
                     "fastp": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "37a98dd100d74d9188a272197663587de1331a0e",
                         "installed_by": ["modules", "fastq_fastqc_umitools_fastp"]
                     },
                     "fastqc": {
@@ -269,7 +269,7 @@
                     },
                     "fastq_fastqc_umitools_fastp": {
                         "branch": "master",
-                        "git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
+                        "git_sha": "48dbb403fb2849b3d2c6c2e3eaaedbcca799428d",
                         "installed_by": ["subworkflows"]
                     },
                     "fastq_fastqc_umitools_trimgalore": {