Skip to content

Commit ec14f2d

Browse files
committed
fix pipeline specific config
1 parent ca7d3b6 commit ec14f2d

File tree

1 file changed

+1
-2
lines changed

1 file changed

+1
-2
lines changed

nextflow.config

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -286,9 +286,8 @@ profiles {
286286
// Load nf-core/rnaseq custom profiles from different institutions.
287287
includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
288288

289-
290289
// Load nf-core/rnaseq custom profiles from different institutions.
291-
includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/rnaseq.config" : "/dev/null"
290+
includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/rnaseq.config" : "/dev/null"
292291

293292
// Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
294293
// Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled

0 commit comments

Comments
 (0)