|
697 | 697 | "salmon/WT_REP2/logs/salmon_quant.log", |
698 | 698 | "salmon/WT_REP2/quant.genes.sf", |
699 | 699 | "salmon/WT_REP2/quant.sf", |
700 | | - "salmon/salmon.merged.gene.SummarizedExperiment.rds", |
701 | | - "salmon/salmon.merged.transcript.SummarizedExperiment.rds", |
702 | 700 | "salmon/deseq2_qc", |
703 | 701 | "salmon/deseq2_qc/R_sessionInfo.log", |
704 | 702 | "salmon/deseq2_qc/deseq2.dds.RData", |
|
712 | 710 | "salmon/deseq2_qc/size_factors/WT_REP1.txt", |
713 | 711 | "salmon/deseq2_qc/size_factors/WT_REP2.txt", |
714 | 712 | "salmon/deseq2_qc/size_factors/deseq2.size_factors.RData", |
| 713 | + "salmon/salmon.merged.gene.SummarizedExperiment.rds", |
715 | 714 | "salmon/salmon.merged.gene_counts.tsv", |
716 | 715 | "salmon/salmon.merged.gene_counts_length_scaled.tsv", |
717 | 716 | "salmon/salmon.merged.gene_counts_scaled.tsv", |
718 | 717 | "salmon/salmon.merged.gene_lengths.tsv", |
719 | 718 | "salmon/salmon.merged.gene_tpm.tsv", |
| 719 | + "salmon/salmon.merged.transcript.SummarizedExperiment.rds", |
720 | 720 | "salmon/salmon.merged.transcript_counts.tsv", |
721 | 721 | "salmon/salmon.merged.transcript_lengths.tsv", |
722 | 722 | "salmon/salmon.merged.transcript_tpm.tsv", |
|
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