fix snapshots

maxulysse · maxulysse · commit f44e93a8e028 · 2024-10-11T15:57:36.000+02:00
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -83,8 +83,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -83,8 +83,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -84,8 +84,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
@@ -1312,4 +1311,4 @@
         },
         "timestamp": "2024-10-10T12:37:31.888584"
     }
-}
+}
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -322,8 +322,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -1261,8 +1261,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -1475,8 +1475,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -395,8 +395,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
@@ -405,4 +404,4 @@
         },
         "timestamp": "2024-10-10T07:07:48.845197"
     }
-}
+}
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -69,8 +69,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {
@@ -790,4 +789,4 @@
         },
         "timestamp": "2024-10-10T11:16:41.081492"
     }
-}
+}
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -1354,8 +1354,7 @@
             ],
             [
                 "genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"
+                "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {

Original file line number	Diff line number	Diff line change
`@@ -83,8 +83,7 @@`
`83`	`83`	`],`
`84`	`84`	`[`
`85`	`85`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`86`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`87`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`86`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`88`	`87`	`]`
`89`	`88`	`],`
`90`	`89`	`"meta": {`
Original file line number	Diff line number	Diff line change
`@@ -84,8 +84,7 @@`
`84`	`84`	`],`
`85`	`85`	`[`
`86`	`86`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`87`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`88`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`87`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`89`	`88`	`]`
`90`	`89`	`],`
`91`	`90`	`"meta": {`
`@@ -1312,4 +1311,4 @@`
`1312`	`1311`	`},`
`1313`	`1312`	`"timestamp": "2024-10-10T12:37:31.888584"`
`1314`	`1313`	`}`
`1315`		`-}`
	`1314`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -322,8 +322,7 @@`
`322`	`322`	`],`
`323`	`323`	`[`
`324`	`324`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`325`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`326`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`325`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`327`	`326`	`]`
`328`	`327`	`],`
`329`	`328`	`"meta": {`
Original file line number	Diff line number	Diff line change
`@@ -1261,8 +1261,7 @@`
`1261`	`1261`	`],`
`1262`	`1262`	`[`
`1263`	`1263`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1264`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1265`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`1264`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`1266`	`1265`	`]`
`1267`	`1266`	`],`
`1268`	`1267`	`"meta": {`
Original file line number	Diff line number	Diff line change
`@@ -1475,8 +1475,7 @@`
`1475`	`1475`	`],`
`1476`	`1476`	`[`
`1477`	`1477`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1478`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1479`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`1478`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`1480`	`1479`	`]`
`1481`	`1480`	`],`
`1482`	`1481`	`"meta": {`
Original file line number	Diff line number	Diff line change
`@@ -395,8 +395,7 @@`
`395`	`395`	`],`
`396`	`396`	`[`
`397`	`397`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`398`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`399`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`398`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`400`	`399`	`]`
`401`	`400`	`],`
`402`	`401`	`"meta": {`
`@@ -405,4 +404,4 @@`
`405`	`404`	`},`
`406`	`405`	`"timestamp": "2024-10-10T07:07:48.845197"`
`407`	`406`	`}`
`408`		`-}`
	`407`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -69,8 +69,7 @@`
`69`	`69`	`],`
`70`	`70`	`[`
`71`	`71`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`72`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`73`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`72`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`74`	`73`	`]`
`75`	`74`	`],`
`76`	`75`	`"meta": {`
`@@ -790,4 +789,4 @@`
`790`	`789`	`},`
`791`	`790`	`"timestamp": "2024-10-10T11:16:41.081492"`
`792`	`791`	`}`
`793`		`-}`
	`792`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -1354,8 +1354,7 @@`
`1354`	`1354`	`],`
`1355`	`1355`	`[`
`1356`	`1356`	`"genome_transcriptome.fasta:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1357`		`- "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e",`
`1358`		`- "multiqc_plots:md5,d41d8cd98f00b204e9800998ecf8427e"`
	`1357`	`+ "genome_transcriptome.gtf:md5,d41d8cd98f00b204e9800998ecf8427e"`
`1359`	`1358`	`]`
`1360`	`1359`	`],`
`1361`	`1360`	`"meta": {`