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include conda changes to local modules too
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-16
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8 files changed

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modules/local/deseq2_qc/environment.yml

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name: deseq2_qc
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::r-base
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- conda-forge::r-optparse
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name: gtf2bed
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::perl=5.26.2
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name: gtf_filter
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::python=3.9.5
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name: multiqc_custom_biotype
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::python=3.9.5
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name: preprocess_transcripts_fasta_gencode
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::sed=4.7
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name: rsem_merge_counts
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- conda-forge::sed=4.7

modules/local/star_align_igenomes/environment.yml

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name: star_align_igenomes
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channels:
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- bioconda::star=2.6.1d
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- bioconda::samtools=1.10

modules/local/star_genomegenerate_igenomes/environment.yml

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name: star_genomegenerate_igenomes
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channels:
32
- conda-forge
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- bioconda
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- defaults
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dependencies:
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- bioconda::star=2.6.1d
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- bioconda::samtools=1.10

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