Update option for new STAR

pinin4fjords · pinin4fjords · commit f99460d1c026 · 2024-10-21T20:38:52.000Z
diff --git a/subworkflows/local/align_star/nextflow.config b/subworkflows/local/align_star/nextflow.config
@@ -20,7 +20,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                         --outFilterMultimapNmax 20
                         --alignSJDBoverhangMin 1
                         --outSAMattributes NH HI AS NM MD
-                        --quantTranscriptomeBan Singleend
+                        --quantTranscriptomeSAMoutput BanSingleEnd
                         --outSAMstrandField intronMotif
                         ${params.save_unaligned || params.contaminant_screening ? '--outReadsUnmapped Fastx' : ''}
                     """.trim())
