Skip to content

Specification of strandedness when starting with BAMs #184

@albamasmalavila

Description

@albamasmalavila

Description of feature

Hello,

I've seen in the documentation that the sample file starting with BAM files does not include the strandedness column. I've tried adding the column when starting with genome BAMs but it looks like it doesn't read it because I see that dexseq_exon uses the default strandedness (-s "yes") instead of the supplied in the samplefile ("unstranded").
Is it possible to specify the strandedness of the library when starting with BAM files (either genome BAMs or transcriptome BAMs)?

Thanks,

Alba

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions