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Merge pull request #77 from kedhammar/seqinspector-params
Replace hard-coded path to fastqscreen example csv with parameter-supplied one
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workflows/seqinspector.nf

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Original file line numberDiff line numberDiff line change
@@ -88,7 +88,7 @@ workflow SEQINSPECTOR {
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if (!("fastqscreen" in skip_tools)) {
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ch_fastqscreen_refs = Channel
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.fromList(samplesheetToList(
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"${projectDir}/assets/example_fastq_screen_references.csv",
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params.fastq_screen_references,
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"${projectDir}/assets/schema_fastq_screen_references.json"
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))
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.toList()

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