trying other methods to creae the multiqc files channel

ctuni · ctuni · commit a9aba3ee70e7 · 2024-10-28T14:23:57.000+01:00
diff --git a/subworkflows/local/phylogenetic_qc.nf b/subworkflows/local/phylogenetic_qc.nf
@@ -40,5 +40,5 @@ workflow PHYLOGENETIC_QC{
     )
 
     emit:
-    kraken2_report = KRAKEN2_KRAKEN2.out.report.collect()
+    kraken2_report = KRAKEN2_KRAKEN2.out.report.map { meta, report -> [ report ] }.collect()
 }

Original file line number	Diff line number	Diff line change
`@@ -40,5 +40,5 @@ workflow PHYLOGENETIC_QC{`
`40`	`40`	`)`
`41`	`41`
`42`	`42`	`emit:`
`43`		`- kraken2_report = KRAKEN2_KRAKEN2.out.report.collect()`
	`43`	`+ kraken2_report = KRAKEN2_KRAKEN2.out.report.map { meta, report -> [ report ] }.collect()`
`44`	`44`	`}`