Merge pull request #3815 from mashehu/add-example-capture-to-modules-test

Author: mashehu

CHANGELOG.md

@@ -31,6 +31,7 @@
 - Support modules with `exec:` blocks ([#3633](https://github.com/nf-core/tools/pull/3633))
 - feat: nf-core modules bump-version supports specifying the toolkit ([#3608](https://github.com/nf-core/tools/pull/3608))
 - Override example keywords in modules test ([#3801](https://github.com/nf-core/tools/pull/3801))
+- update test assertions in modules template to current recommendations and remove `single_end` from example meta value ([#3815](https://github.com/nf-core/tools/pull/3815))
 
 ### Subworkflows
 

nf_core/module-template/tests/main.nf.test.j2

@@ -27,7 +27,7 @@ nextflow_process {
                 // TODO nf-core: define inputs of the process here. Example:
                 {% if has_meta %}
                 input[0] = [
-                    [ id:'test', single_end:false ], // meta map
+                    [ id:'test' ],
                     file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
                 ]
                 {%- else %}
@@ -38,9 +38,12 @@ nextflow_process {
         }
 
         then {
+            assert process.success
             assertAll(
-                { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    process.out,
+                    path(process.out.versions[0]).yaml
+                ).match() }
                 //TODO nf-core: Add all required assertions to verify the test output.
                 // See https://nf-co.re/docs/contributing/tutorials/nf-test_assertions for more information and examples.
             )
@@ -59,7 +62,7 @@ nextflow_process {
                 // TODO nf-core: define inputs of the process here. Example:
                 {% if has_meta %}
                 input[0] = [
-                    [ id:'test', single_end:false ], // meta map
+                    [ id:'test' ],
                     file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
                 ]
                 {%- else %}
@@ -70,10 +73,12 @@ nextflow_process {
         }
 
         then {
+            assert process.success
             assertAll(
-                { assert process.success },
-                { assert snapshot(process.out).match() }
-                //TODO nf-core: Add all required assertions to verify the test output.
+                { assert snapshot(
+                    process.out,
+                    path(process.out.versions[0]).yaml
+                ).match() }
             )
         }
 

nf_core/subworkflow-template/tests/main.nf.test.j2

@@ -33,12 +33,13 @@ nextflow_workflow {
                 """
             }
         }
-
         then {
+            assert workflow.success
             assertAll(
-                { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
-                //TODO nf-core: Add all required assertions to verify the test output.
+                { assert snapshot(
+                    workflow.out
+                    //TODO nf-core: Add all required assertions to verify the test output.
+                ).match() }
             )
         }
     }